{ "type": "genome", "identifier": "GCF_003855455.1", "organism": "Mycoplasma struthionis", "title": "Mycoplasma struthionis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003855455.1", "bioproject": "PRJNA224116", "biosample": "SAMN10411876", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "538220", "species_taxid": "538220", "organism_name": "Mycoplasma struthionis", "infraspecific_name": "strain=237IA", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/02", "asm_name": "ASM385545v1", "asm_submitter": "Institute of Microbiology", "gbrs_paired_asm": "GCA_003855455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/855/455/GCF_003855455.1_ASM385545v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "737591", "genome_size_ungapped": "737591", "gc_percent": "26.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003855455.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "702", "protein_coding_gene_count": "651", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-02", "dateModified": "2018-12-02", "datePublished": "2018-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycoplasma struthionis" ], "sample_taxid": [ "538220" ], "sample_host_organism": [ "ostrich" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Namibia" ], "sample_host_location_id": [], "data_size": "0.190 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "737591", "Number of Sequences": "1", "Longest Sequences (bp)": "737591", "N50 (bp)": "737591", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "26.2", "Number of CDSs": "1122", "Average Protein Length": "146.1", "Coding Ratio (%)": "66.7", "Number of rRNAs": "9", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycoplasma struthionis", "strain": "strain=237IA", "accession": "GCA_003855455.1", "taxid": 538220, "species_taxid": 538220, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 241, "total_fragments": 245, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Metamycoplasma anseris", "strain": "strain=ATCC 49234", "accession": "GCA_003285045.1", "taxid": 92400, "species_taxid": 92400, "relation_to_type": "type", "validated": true, "ani": 79.1116, "matched_fragments": 72, "total_fragments": 245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metamycoplasma anseris", "strain": "strain=ATCC 49234", "accession": "GCA_000702805.1", "taxid": 92400, "species_taxid": 92400, "relation_to_type": "type", "validated": true, "ani": 78.8162, "matched_fragments": 71, "total_fragments": 245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metamycoplasma orale", "strain": "strain=NCTC10112", "accession": "GCA_900660435.1", "taxid": 2121, "species_taxid": 2121, "relation_to_type": "type", "validated": true, "ani": 77.8622, "matched_fragments": 64, "total_fragments": 245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metamycoplasma orale", "strain": 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003332325.1", "gtdb_species": "s__Metamycoplasma phocidae", "ani": 78.5439, "matched_fragments": 73, "total_fragments": 245, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900660445.2", "gtdb_species": "s__Metamycoplasma salivarium", "ani": 78.3145, "matched_fragments": 56, "total_fragments": 245, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000420105.1", "gtdb_species": "s__Metamycoplasma orale", "ani": 77.6883, "matched_fragments": 66, "total_fragments": 245, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Metamycoplasmataceae;g__Metamycoplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.618, "cell_length": -0.458, "doubling_h": 0.566, "growth_tmp": 36.578, "optimum_tmp": 35.987, "optimum_ph": 7.6, "genome_size": 851576.622, "gc_content": 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