{ "type": "genome", "identifier": "GCF_003857035.1", "organism": "Micromonospora arida", "title": "Micromonospora arida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Newcastle University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003857035.1", "bioproject": "PRJNA224116", "biosample": "SAMN09254037", "wgs_master": "QGSY00000000.1", "refseq_category": "na", "taxid": "2203715", "species_taxid": "2203715", "organism_name": "Micromonospora arida", "infraspecific_name": "strain=LB32", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/03", "asm_name": "ASM385703v1", "asm_submitter": "Newcastle University", "gbrs_paired_asm": "GCA_003857035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/857/035/GCF_003857035.1_ASM385703v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7149450", "genome_size_ungapped": "7149450", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "345", "contig_count": "345", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003857035.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "6745", "protein_coding_gene_count": "6541", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-03", "dateModified": "2018-12-03", "datePublished": "2018-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora arida" ], "sample_taxid": [ "2203715" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Lomas Bayas" ], "sample_host_location_id": [], "data_size": "1.939 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7149450", "Number of Sequences": "345", "Longest Sequences (bp)": "146758", "N50 (bp)": "37596", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.0", "Number of CDSs": "6508", "Average Protein Length": "314.4", "Coding Ratio (%)": "85.8", "Number of rRNAs": "3", "Number of tRNAs": "69", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora arida", "strain": "strain=LB32", "accession": "GCA_003857035.1", "taxid": 2203715, "species_taxid": 2203715, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2191, "total_fragments": 2206, "ani_threshold": 95, "status": "inconclusive" }, { 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"strain=DSM 101692", "accession": "GCA_015751765.1", "taxid": 709868, "species_taxid": 709868, "relation_to_type": "type", "validated": true, "ani": 93.6071, "matched_fragments": 1789, "total_fragments": 2206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inaquosa", "strain": "strain=LB39", "accession": "GCA_003857055.1", "taxid": 2203716, "species_taxid": 2203716, "relation_to_type": "type", "validated": true, "ani": 92.752, "matched_fragments": 1683, "total_fragments": 2206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora violae", "strain": "strain=DSM 45888", "accession": "GCA_004217135.1", "taxid": 1278207, "species_taxid": 1278207, "relation_to_type": "type", "validated": true, "ani": 92.3666, "matched_fragments": 1773, "total_fragments": 2206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora parathelypteridis", "strain": "strain=CGMCC 4.7347", "accession": "GCA_014646315.1", "taxid": 1839617, "species_taxid": 1839617, "relation_to_type": "type", "validated": true, "ani": 90.2994, "matched_fragments": 1691, "total_fragments": 2206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora parathelypteridis", "strain": "strain=DSM 103125", "accession": "GCA_014201145.1", "taxid": 1839617, "species_taxid": 1839617, "relation_to_type": "type", "validated": true, "ani": 90.2402, "matched_fragments": 1698, "total_fragments": 2206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora taraxaci", "strain": "strain=DSM 45885", "accession": "GCA_007830095.1", "taxid": 1316803, "species_taxid": 1316803, "relation_to_type": "type", "validated": true, "ani": 90.206, "matched_fragments": 1779, "total_fragments": 2206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora luteifusca", "strain": "strain=DSM 100204", "accession": "GCA_016907275.1", "taxid": 709860, "species_taxid": 709860, "relation_to_type": "type", "validated": true, "ani": 90.1932, "matched_fragments": 1679, "total_fragments": 2206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 88.8699, "matched_fragments": 1458, "total_fragments": 2206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 85.1411, "matched_fragments": 1084, "total_fragments": 2206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora mirobrigensis", "strain": "strain=DSM 44830", "accession": "GCA_900091555.1", "taxid": 262898, "species_taxid": 262898, 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