{ "type": "genome", "identifier": "GCF_003857055.1", "organism": "Micromonospora inaquosa", "title": "Micromonospora inaquosa", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Newcastle University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003857055.1", "bioproject": "PRJNA224116", "biosample": "SAMN09254133", "wgs_master": "QGSZ00000000.1", "refseq_category": "reference genome", "taxid": "2203716", "species_taxid": "2203716", "organism_name": "Micromonospora inaquosa", "infraspecific_name": "strain=LB39", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/03", "asm_name": "ASM385705v1", "asm_submitter": "Newcastle University", "gbrs_paired_asm": "GCA_003857055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/857/055/GCF_003857055.1_ASM385705v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7748575", "genome_size_ungapped": "7748575", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "408", "contig_count": "408", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003857055.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "7261", "protein_coding_gene_count": "6997", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-03", "dateModified": "2018-12-03", "datePublished": "2018-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora inaquosa" ], "sample_taxid": [ "2203716" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Lomas Bayas" ], "sample_host_location_id": [], "data_size": "2.112 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7748575", "Number of Sequences": "408", "Longest Sequences (bp)": "152409", "N50 (bp)": "32815", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "6948", "Average Protein Length": "315.6", "Coding Ratio (%)": "84.9", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora inaquosa", "strain": "strain=LB39", "accession": "GCA_003857055.1", "taxid": 2203716, "species_taxid": 2203716, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2368, "total_fragments": 2386, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Micromonospora saelicesensis", "strain": "strain=DSM 44871", "accession": "GCA_900091575.1", "taxid": 285676, "species_taxid": 285676, "relation_to_type": "type", "validated": true, "ani": 92.9969, "matched_fragments": 1810, "total_fragments": 2386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ureilytica", "strain": "strain=DSM 101692", "accession": "GCA_015751765.1", "taxid": 709868, "species_taxid": 709868, "relation_to_type": "type", "validated": true, "ani": 92.9898, "matched_fragments": 1723, "total_fragments": 2386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora noduli", "strain": "strain=GUI43", "accession": "GCA_003264365.1", "taxid": 709876, "species_taxid": 709876, "relation_to_type": "type", "validated": true, "ani": 92.9416, "matched_fragments": 1759, "total_fragments": 2386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora arida", "strain": "strain=LB32", "accession": "GCA_003857035.1", "taxid": 2203715, "species_taxid": 2203715, "relation_to_type": "type", "validated": true, "ani": 92.9108, "matched_fragments": 1651, "total_fragments": 2386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora vinacea", "strain": "strain=DSM 101695", "accession": "GCA_015751785.1", "taxid": 709878, "species_taxid": 709878, "relation_to_type": "type", "validated": true, "ani": 92.8246, "matched_fragments": 1799, "total_fragments": 2386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora violae", "strain": "strain=DSM 45888", "accession": "GCA_004217135.1", "taxid": 1278207, "species_taxid": 1278207, "relation_to_type": "type", "validated": true, "ani": 92.3796, "matched_fragments": 1780, "total_fragments": 2386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora luteifusca", "strain": "strain=DSM 100204", "accession": "GCA_016907275.1", "taxid": 709860, "species_taxid": 709860, "relation_to_type": "type", "validated": true, "ani": 89.9934, "matched_fragments": 1685, "total_fragments": 2386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 88.6502, "matched_fragments": 1438, "total_fragments": 2386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora cremea", "strain": "strain=DSM 45599", "accession": "GCA_900143515.1", "taxid": 709881, "species_taxid": 709881, "relation_to_type": "type", "validated": true, "ani": 88.3595, "matched_fragments": 1622, "total_fragments": 2386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", 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