{ "type": "genome", "identifier": "GCF_003858635.1", "organism": "Larkinella rosea", "title": "Larkinella rosea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huazhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003858635.1", "bioproject": "PRJNA224116", "biosample": "SAMN10461745", "wgs_master": "RQJO00000000.1", "refseq_category": "reference genome", "taxid": "2025312", "species_taxid": "2025312", "organism_name": "Larkinella rosea", "infraspecific_name": "strain=KCTC52004", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/03", "asm_name": "ASM385863v1", "asm_submitter": "Huazhong Agricultural University", "gbrs_paired_asm": "GCA_003858635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/858/635/GCF_003858635.1_ASM385863v1", "excluded_from_refseq": 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"sample_host_location_id": [], "data_size": "2.310 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8176205", "Number of Sequences": "18", "Longest Sequences (bp)": "2158016", "N50 (bp)": "1269924", "Gap Ratio (%)": "0.003669", "GCcontent (%)": "50.9", "Number of CDSs": "6482", "Average Protein Length": "373.4", "Coding Ratio (%)": "88.8", "Number of rRNAs": "4", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Larkinella rosea", "strain": "strain=KCTC52004", "accession": "GCA_003858635.1", "taxid": 2025312, "species_taxid": 2025312, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2716, "total_fragments": 2716, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Larkinella terrae", "strain": "strain=KCTC 52001", "accession": "GCA_009668025.1", "taxid": 2025311, "species_taxid": 2025311, "relation_to_type": "type", "validated": true, "ani": 86.4173, "matched_fragments": 2075, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella punicea", "strain": "strain=ZZJ9", "accession": "GCA_003334855.1", "taxid": 2315727, "species_taxid": 2315727, "relation_to_type": "type", "validated": true, "ani": 81.8981, "matched_fragments": 1696, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella humicola", "strain": "strain=MA1", "accession": "GCA_008727875.1", "taxid": 2607654, "species_taxid": 2607654, "relation_to_type": "type", "validated": true, "ani": 81.7702, "matched_fragments": 1731, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella knui", 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Larkinella", "rosea" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }