{
    "type": "genome",
    "identifier": "GCF_003858645.1",
    "organism": "Larkinella knui",
    "title": "Larkinella knui",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Huazhong Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003858645.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10461747",
        "wgs_master": "RQJP00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2025310",
        "species_taxid": "2025310",
        "organism_name": "Larkinella knui",
        "infraspecific_name": "strain=KCTC42998",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/03",
        "asm_name": "ASM385864v1",
        "asm_submitter": "Huazhong Agricultural University",
        "gbrs_paired_asm": "GCA_003858645.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/858/645/GCF_003858645.1_ASM385864v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7652494",
        "genome_size_ungapped": "7652494",
        "gc_percent": "51.500000",
        "replicon_count": "0",
        "scaffold_count": "18",
        "contig_count": "18",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003858645.1-RS_2024_09_16",
        "annotation_date": "2024-09-16",
        "total_gene_count": "6257",
        "protein_coding_gene_count": "6188",
        "non_coding_gene_count": "51",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-03",
    "dateModified": "2018-12-03",
    "datePublished": "2018-12-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Larkinella knui"
        ],
        "sample_taxid": [
            "2025310"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.166 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7652494",
        "Number of Sequences": "18",
        "Longest Sequences (bp)": "2200146",
        "N50 (bp)": "1108645",
        "Gap Ratio (%)": "0.000144",
        "GCcontent (%)": "51.4",
        "Number of CDSs": "6199",
        "Average Protein Length": "363.3",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Larkinella knui",
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                "accession": "GCA_003858645.1",
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                "species_taxid": 2025310,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 2541,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Larkinella punicea",
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                "accession": "GCA_003334855.1",
                "taxid": 2315727,
                "species_taxid": 2315727,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1747,
                "total_fragments": 2541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Larkinella humicola",
                "strain": "strain=MA1",
                "accession": "GCA_008727875.1",
                "taxid": 2607654,
                "species_taxid": 2607654,
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                "ani": 83.4345,
                "matched_fragments": 1783,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Larkinella rosea",
                "strain": "strain=KCTC52004",
                "accession": "GCA_003858635.1",
                "taxid": 2025312,
                "species_taxid": 2025312,
                "relation_to_type": "type",
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                "ani": 81.6675,
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                "total_fragments": 2541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Larkinella terrae",
                "strain": "strain=KCTC 52001",
                "accession": "GCA_009668025.1",
                "taxid": 2025311,
                "species_taxid": 2025311,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5791,
                "matched_fragments": 1639,
                "total_fragments": 2541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Larkinella arboricola",
                "strain": "strain=DSM 21851",
                "accession": "GCA_003259745.1",
                "taxid": 643671,
                "species_taxid": 643671,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.947,
                "matched_fragments": 1280,
                "total_fragments": 2541,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003858645.1",
                "gtdb_species": "s__Larkinella knui",
                "ani": 100.0,
                "matched_fragments": 2540,
                "total_fragments": 2541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003334855.1",
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                "total_fragments": 2541,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006149005.1",
                "gtdb_species": "s__Larkinella sp006149005",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008727875.1",
                "gtdb_species": "s__Larkinella sp008727875",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_009668025.1",
                "gtdb_species": "s__Larkinella terrae",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Larkinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.14,
        "cell_length": 0.259,
        "doubling_h": null,
        "growth_tmp": 25.0,
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        "genome_size": 7020148.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Larkinella",
        "knui"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}