{
    "type": "genome",
    "identifier": "GCF_003860465.1",
    "organism": "Deinococcus psychrotolerans",
    "title": "Deinococcus psychrotolerans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "College of Life Science",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003860465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10440545",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2489213",
        "species_taxid": "2489213",
        "organism_name": "Deinococcus psychrotolerans",
        "infraspecific_name": "strain=S14-83",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/04",
        "asm_name": "ASM386046v1",
        "asm_submitter": "College of Life Science",
        "gbrs_paired_asm": "GCA_003860465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/860/465/GCF_003860465.1_ASM386046v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4397705",
        "genome_size_ungapped": "4397705",
        "gc_percent": "61.000000",
        "replicon_count": "7",
        "scaffold_count": "7",
        "contig_count": "7",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003860465.1-RS_2024_03_31",
        "annotation_date": "2024-03-31",
        "total_gene_count": "4228",
        "protein_coding_gene_count": "4113",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-04",
    "dateModified": "2018-12-04",
    "datePublished": "2018-12-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deinococcus psychrotolerans"
        ],
        "sample_taxid": [
            "2489213"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Antarctica"
        ],
        "sample_host_location_id": [],
        "data_size": "1.227 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4397705",
        "Number of Sequences": "7",
        "Longest Sequences (bp)": "2784072",
        "N50 (bp)": "2784072",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.1",
        "Number of CDSs": "4170",
        "Average Protein Length": "306.1",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "7",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Deinococcus psychrotolerans",
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                "accession": "GCA_003860465.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1463,
                "total_fragments": 1463,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deinococcus detaillensis",
                "strain": "strain=H1",
                "accession": "GCA_007280555.1",
                "taxid": 2592048,
                "species_taxid": 2592048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.3137,
                "matched_fragments": 1093,
                "total_fragments": 1463,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Deinococcus rubellus",
                "strain": "strain=Ant6",
                "accession": "GCA_025244745.1",
                "taxid": 1889240,
                "species_taxid": 1889240,
                "relation_to_type": "type",
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                "ani": 81.8634,
                "matched_fragments": 720,
                "total_fragments": 1463,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Deinococcus alpinitundrae",
                "strain": "strain=LMG 24283",
                "accession": "GCA_009982895.1",
                "taxid": 468913,
                "species_taxid": 468913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5859,
                "matched_fragments": 843,
                "total_fragments": 1463,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Deinococcus irradiatisoli",
                "strain": "strain=17bor-2",
                "accession": "GCA_003173015.1",
                "taxid": 2202254,
                "species_taxid": 2202254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7235,
                "matched_fragments": 637,
                "total_fragments": 1463,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003860465.1",
                "gtdb_species": "s__Deinococcus sp003860465",
                "ani": 100.0,
                "matched_fragments": 1463,
                "total_fragments": 1463,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_007280555.1",
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                "matched_fragments": 1095,
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009982895.1",
                "gtdb_species": "s__Deinococcus alpinitundrae",
                "ani": 81.5628,
                "matched_fragments": 846,
                "total_fragments": 1463,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003173015.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000252445.1",
                "gtdb_species": "s__Deinococcus gobiensis",
                "ani": 77.4969,
                "matched_fragments": 337,
                "total_fragments": 1463,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011067105.1",
                "gtdb_species": "s__Deinococcus wulumuqiensis",
                "ani": 77.4792,
                "matched_fragments": 318,
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
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                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 19,
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            },
            {
                "accession": "GCF_000190555.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000186385.1",
                "gtdb_species": "s__Deinococcus_B maricopensis",
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                "matched_fragments": 164,
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_014646915.1",
                "gtdb_species": "s__Deinococcus aquiradiocola",
                "ani": 76.5725,
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.3,
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    },
    "_genome_taxon": [
        "Deinococcus",
        "psychrotolerans"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}