{
    "type": "genome",
    "identifier": "GCF_003862465.1",
    "organism": "Rheinheimera mesophila",
    "title": "Rheinheimera mesophila",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Environment and Plant Protection Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003862465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10496970",
        "wgs_master": "RRCF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1547515",
        "species_taxid": "1547515",
        "organism_name": "Rheinheimera mesophila",
        "infraspecific_name": "strain=IITR13",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/04",
        "asm_name": "ASM386246v1",
        "asm_submitter": "Environment and Plant Protection Institute",
        "gbrs_paired_asm": "GCA_003862465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/862/465/GCF_003862465.1_ASM386246v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3817161",
        "genome_size_ungapped": "3817161",
        "gc_percent": "48.000000",
        "replicon_count": "0",
        "scaffold_count": "22",
        "contig_count": "22",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003862465.1-RS_2024_07_15",
        "annotation_date": "2024-07-15",
        "total_gene_count": "3568",
        "protein_coding_gene_count": "3470",
        "non_coding_gene_count": "90",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-04",
    "dateModified": "2018-12-04",
    "datePublished": "2018-12-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rheinheimera mesophila"
        ],
        "sample_taxid": [
            "1547515"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India: Cochin region"
        ],
        "sample_host_location_id": [],
        "data_size": "1.082 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3817161",
        "Number of Sequences": "22",
        "Longest Sequences (bp)": "1804276",
        "N50 (bp)": "678477",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.9",
        "Number of CDSs": "3483",
        "Average Protein Length": "329.2",
        "Coding Ratio (%)": "90.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "81",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Pararheinheimera mesophila",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
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            {
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                "status": "below_threshold"
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            {
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rheinheimera riviphila",
                "strain": "strain=KYPC3",
                "accession": "GCA_004005945.1",
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                "species_taxid": 1834037,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 331,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pararheinheimera texasensis",
                "strain": "strain=DSM 17496",
                "accession": "GCA_000711985.1",
                "taxid": 306205,
                "species_taxid": 306205,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rheinheimera maricola",
                "strain": "strain=MA-13",
                "accession": "GCA_016918075.2",
                "taxid": 2793282,
                "species_taxid": 2793282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7595,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rheinheimera nanhaiensis",
                "strain": "strain=E407-8",
                "accession": "GCA_000296695.1",
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                "species_taxid": 1163621,
                "relation_to_type": "type",
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                "matched_fragments": 209,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arsukibacterium indicum",
                "strain": "strain=SM2107",
                "accession": "GCA_019100565.1",
                "taxid": 2848612,
                "species_taxid": 2848612,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6572,
                "matched_fragments": 161,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rheinheimera lutimaris",
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                "taxid": 2740584,
                "species_taxid": 2740584,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1265,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_000986865.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pararheinheimera",
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                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
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            {
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            {
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCA_018825965.1",
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            {
                "accession": "GCF_004005375.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}