{ "type": "genome", "identifier": "GCF_003863965.1", "organism": "Paenibacillus oralis", "title": "Paenibacillus oralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korean Collection for Oral Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003863965.1", "bioproject": "PRJNA224116", "biosample": "SAMN10461998", "wgs_master": "RRCN00000000.1", "refseq_category": "reference genome", "taxid": "2490856", "species_taxid": "2490856", "organism_name": "Paenibacillus oralis", "infraspecific_name": "strain=KCOM 3021", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/04", "asm_name": "ASM386396v1", "asm_submitter": "Korean Collection for Oral Microbiology", "gbrs_paired_asm": "GCA_003863965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/863/965/GCF_003863965.1_ASM386396v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8108289", "genome_size_ungapped": "8102330", "gc_percent": "51.500000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003863965.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "7308", "protein_coding_gene_count": "7037", "non_coding_gene_count": "115", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-04", "dateModified": "2018-12-04", "datePublished": "2018-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus oralis" ], "sample_taxid": [ "2490856" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "gingivitis" ], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus phocaensis", "strain": "strain=mt24", "accession": "GCA_900021165.1", "taxid": 1776378, "species_taxid": 1776378, "relation_to_type": "type", "validated": true, "ani": 80.4841, "matched_fragments": 846, "total_fragments": 2700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus timonensis", "strain": "strain=DSM 16943", "accession": "GCA_022427145.1", "taxid": 225915, "species_taxid": 225915, "relation_to_type": "type", "validated": true, "ani": 80.3402, "matched_fragments": 817, "total_fragments": 2700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus caui", "strain": "strain=81-11", "accession": "GCA_019904135.1", "taxid": 2873927, "species_taxid": 2873927, "relation_to_type": "type", "validated": true, "ani": 77.9184, "matched_fragments": 267, "total_fragments": 2700, "ani_threshold": 95, "status": "below_threshold" }, { 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"min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000159955.1", "gtdb_species": "s__Paenibacillus_A sp000159955", "ani": 79.7692, "matched_fragments": 698, "total_fragments": 2700, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009725205.1", "gtdb_species": "s__Paenibacillus_A timonensis", "ani": 79.7271, "matched_fragments": 730, "total_fragments": 2700, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.34", "min_intra_species_ani": "98.12", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.187, "cell_length": 0.433, "doubling_h": 0.565, "growth_tmp": 30.106, "optimum_tmp": 31.323, "optimum_ph": 7.238, "genome_size": 6197949.921, "gc_content": 50.283, "coding_genes": 5381.029, "rRNA16S_genes": 10.237, "tRNA_genes": 93.313, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.918, "range_salinity": 0.0, "facultative_respiration": 0.347, "anaerobic_respiration": 0.007, "aerobic_respiration": 0.645, "mesophilic_range_tmp": 0.9, "thermophilic_range_tmp": 0.033, "psychrophilic_range_tmp": 0.066, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paenibacillus", "oralis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }