{ "type": "genome", "identifier": "GCF_003864335.1", "organism": "Lentilactobacillus kosonis", "title": "Lentilactobacillus kosonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Lactobacillus curieae", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003864335.1", "bioproject": "PRJNA224116", "biosample": "SAMD00070991", "wgs_master": "BEXA00000000.1", "refseq_category": "reference genome", "taxid": "2810561", "species_taxid": "2810561", "organism_name": "Lentilactobacillus kosonis", "infraspecific_name": "strain=NBRC 111893", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/30", "asm_name": "ASM386433v1", "asm_submitter": "Lactobacillus curieae", "gbrs_paired_asm": "GCA_003864335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/864/335/GCF_003864335.1_ASM386433v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1971719", "genome_size_ungapped": "1971719", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003864335.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "2254", "protein_coding_gene_count": "1752", "non_coding_gene_count": "59", "pubmed_id": "34779759" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-30", "dateModified": "2018-11-30", "datePublished": "2018-11-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Lentilactobacillus kosonis" ], "sample_taxid": [ "2810561" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Nagano, Saku" ], "sample_host_location_id": [], "data_size": "0.559 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.45, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1971719", "Number of Sequences": "21", "Longest Sequences (bp)": "556830", "N50 (bp)": "471655", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.9", "Number of CDSs": "2536", "Average Protein Length": "224.4", "Coding Ratio (%)": "86.6", "Number of rRNAs": "2", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lentilactobacillus kosonis", "strain": "strain=NBRC111893", "accession": "GCA_003864335.1", "taxid": 2810561, "species_taxid": 2810561, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus otakiensis", "strain": "strain=DSM 19908", "accession": "GCA_001434145.1", "taxid": 481720, "species_taxid": 481720, "relation_to_type": "type", "validated": true, "ani": 78.4212, "matched_fragments": 91, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus otakiensis", "strain": "strain=JCM 15040", "accession": "GCA_001311395.1", "taxid": 481720, "species_taxid": 481720, "relation_to_type": "type", "validated": true, "ani": 78.4168, "matched_fragments": 92, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus parakefiri", "strain": "strain=JCM 8573", "accession": "GCA_002157585.1", "taxid": 152332, "species_taxid": 152332, "relation_to_type": "type", "validated": true, "ani": 78.3726, "matched_fragments": 74, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus hilgardii", "strain": "strain=ATCC 8290", "accession": "GCA_000159315.1", "taxid": 1588, "species_taxid": 1588, "relation_to_type": "type", "validated": true, "ani": 78.1173, "matched_fragments": 98, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus hilgardii", "strain": "strain=ATCC 8290", "accession": "GCA_004354795.1", "taxid": 1588, "species_taxid": 1588, "relation_to_type": "type", "validated": true, "ani": 78.0557, "matched_fragments": 100, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus hilgardii", "strain": "strain=DSM 20176", "accession": "GCA_001434655.1", "taxid": 1588, "species_taxid": 1588, "relation_to_type": "type", "validated": true, "ani": 78.013, "matched_fragments": 96, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Apilactobacillus xinyiensis", "strain": "strain=F575-4", "accession": "GCA_019656235.1", "taxid": 2841032, "species_taxid": 2841032, "relation_to_type": "type", "validated": true, "ani": 77.9952, "matched_fragments": 56, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Apilactobacillus ozensis", "strain": "strain=DSM 23829", "accession": "GCA_001435995.1", "taxid": 866801, "species_taxid": 866801, "relation_to_type": "type", "validated": true, "ani": 77.933, "matched_fragments": 56, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus sunkii", "strain": "strain=DSM 19904", "accession": "GCA_001435575.1", "taxid": 481719, "species_taxid": 481719, "relation_to_type": "type", "validated": true, "ani": 77.8867, "matched_fragments": 91, "total_fragments": 647, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentilactobacillus kribbianus", "strain": 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