{ "type": "genome", "identifier": "GCF_003865345.1", "organism": "Nonlabens xiamenensis", "title": "Nonlabens xiamenensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, SOA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003865345.1", "bioproject": "PRJNA224116", "biosample": "SAMN10410588", "wgs_master": "RMVE00000000.1", "refseq_category": "reference genome", "taxid": "2341043", "species_taxid": "2341043", "organism_name": "Nonlabens xiamenensis", "infraspecific_name": "strain=1Q3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/05", "asm_name": "ASM386534v1", "asm_submitter": "Third Institute of Oceanography, SOA", "gbrs_paired_asm": "GCA_003865345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/865/345/GCF_003865345.1_ASM386534v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3684258", "genome_size_ungapped": "3684258", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003865345.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3279", "protein_coding_gene_count": "3227", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-05", "dateModified": "2018-12-05", "datePublished": "2018-12-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonlabens xiamenensis" ], "sample_taxid": [ "2341043" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xiamen" ], "sample_host_location_id": [], "data_size": "1.046 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3684258", "Number of Sequences": "13", "Longest Sequences (bp)": "1124868", "N50 (bp)": "771327", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.1", "Number of CDSs": "3199", "Average Protein Length": "340.8", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonlabens xiamenensis", "strain": "strain=1Q3", "accession": "GCA_003865345.1", "taxid": 2341043, "species_taxid": 2341043, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1219, "total_fragments": 1220, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nonlabens dokdonensis", "strain": "strain=DSM 17205", "accession": "GCA_003254015.1", "taxid": 328515, "species_taxid": 328515, "relation_to_type": "type", "validated": true, "ani": 77.7486, "matched_fragments": 162, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonlabens dokdonensis", "strain": "strain=DSW-6", "accession": "GCA_000332115.1", "taxid": 328515, "species_taxid": 328515, "relation_to_type": "type", "validated": true, "ani": 77.6862, "matched_fragments": 161, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonlabens marinus", "strain": "strain=S1-08", "accession": "GCA_000831385.1", "taxid": 930802, "species_taxid": 930802, "relation_to_type": "type", "validated": true, "ani": 77.6278, "matched_fragments": 117, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonlabens antarcticus", "strain": "strain=JCM 14068", "accession": "GCA_015356755.1", "taxid": 392714, "species_taxid": 392714, "relation_to_type": "type", "validated": true, "ani": 77.5789, "matched_fragments": 87, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonlabens xylanidelens", "strain": "strain=DSM 16809", "accession": "GCA_002934445.1", "taxid": 191564, "species_taxid": 191564, "relation_to_type": "type", "validated": true, "ani": 77.1651, "matched_fragments": 152, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonlabens xylanidelens", "strain": "strain=DSM 16809", "accession": "GCA_002954345.1", "taxid": 191564, "species_taxid": 191564, "relation_to_type": "type", "validated": true, "ani": 77.146, "matched_fragments": 156, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonlabens spongiae", "strain": "strain=JCM 13191", "accession": "GCA_002117125.1", "taxid": 331648, "species_taxid": 331648, "relation_to_type": "type", "validated": true, "ani": 77.0791, "matched_fragments": 106, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=CGMCC 1.12213", "accession": "GCA_900141715.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 76.2779, "matched_fragments": 50, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=P7-3-5", "accession": "GCA_000283015.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 76.1665, "matched_fragments": 50, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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