{ "type": "genome", "identifier": "GCF_003865365.1", "organism": "Flavobacterium macacae", "title": "Flavobacterium macacae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003865365.1", "bioproject": "PRJNA224116", "biosample": "SAMN10434608", "wgs_master": "RQVR00000000.1", "refseq_category": "reference genome", "taxid": "2488993", "species_taxid": "2488993", "organism_name": "Flavobacterium macacae", "infraspecific_name": "strain=YIM 102600", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/05", "asm_name": "ASM386536v1", "asm_submitter": "Yunnan Institute of Microbiology", "gbrs_paired_asm": "GCA_003865365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/865/365/GCF_003865365.1_ASM386536v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3368147", "genome_size_ungapped": "3367744", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003865365.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3159", "protein_coding_gene_count": "3085", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-05", "dateModified": "2018-12-05", "datePublished": "2018-12-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium macacae" ], "sample_taxid": [ "2488993" ], "sample_host_organism": [ "Macaca mulatta" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.944 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3368147", "Number of Sequences": "56", "Longest Sequences (bp)": "366309", "N50 (bp)": "172194", "Gap Ratio (%)": "0.011965", "GCcontent (%)": "36.6", "Number of CDSs": "3025", "Average Protein Length": "319.6", "Coding Ratio (%)": "86.1", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium macacae", "strain": "strain=YIM 102600", "accession": "GCA_003865365.1", "taxid": 2488993, "species_taxid": 2488993, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1092, "total_fragments": 1094, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium gossypii", "strain": "strain=DSM 100397", "accession": "GCA_014138495.1", "taxid": 1646119, "species_taxid": 1646119, "relation_to_type": "type", "validated": true, "ani": 79.9105, "matched_fragments": 476, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endophyticum", "strain": "strain=DSM 29537", "accession": "GCA_003634455.1", "taxid": 1540163, "species_taxid": 1540163, "relation_to_type": "type", "validated": true, "ani": 79.7351, "matched_fragments": 487, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soli", "strain": "strain=DSM 19725", "accession": "GCA_000422705.1", "taxid": 344881, "species_taxid": 344881, "relation_to_type": "type", "validated": true, "ani": 79.2401, "matched_fragments": 349, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium microcysteis", "strain": "strain=MaA-Y11", "accession": "GCA_006385255.1", "taxid": 2596891, "species_taxid": 2596891, "relation_to_type": "type", "validated": true, "ani": 79.1918, "matched_fragments": 443, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lindanitolerans", "strain": "strain=IP-10", "accession": "GCA_002846575.1", "taxid": 428988, "species_taxid": 428988, "relation_to_type": "type", "validated": true, "ani": 79.0964, "matched_fragments": 416, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium faecale", "strain": "strain=WV33", "accession": "GCA_003076455.1", "taxid": 1355330, "species_taxid": 1355330, "relation_to_type": "type", "validated": true, "ani": 78.1966, "matched_fragments": 178, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saccharophilum", "strain": "strain=DSM 1811", "accession": "GCA_900142735.1", "taxid": 29534, "species_taxid": 29534, "relation_to_type": "type", "validated": true, "ani": 77.9584, "matched_fragments": 260, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 77.9062, "matched_fragments": 275, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 77.8122, "matched_fragments": 207, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.5578, "matched_fragments": 197, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 77.5307, "matched_fragments": 159, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium orientale", "strain": "strain=CGMCC 1.12506", "accession": "GCA_014638005.1", "taxid": 1756020, "species_taxid": 1756020, "relation_to_type": "type", "validated": true, "ani": 77.504, "matched_fragments": 223, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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"s__Flavobacterium sp000708595", "ani": 78.3181, "matched_fragments": 257, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000426145.1", "gtdb_species": "s__Flavobacterium sp000426145", "ani": 78.2208, "matched_fragments": 256, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003076455.1", "gtdb_species": "s__Flavobacterium faecale", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "macacae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }