{ "type": "genome", "identifier": "GCF_003865375.1", "organism": "Gulosibacter macacae", "title": "Gulosibacter macacae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003865375.1", "bioproject": "PRJNA224116", "biosample": "SAMN10434609", "wgs_master": "RQVS00000000.1", "refseq_category": "reference genome", "taxid": "2488791", "species_taxid": "2488791", "organism_name": "Gulosibacter macacae", "infraspecific_name": "strain=YIM 102482-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/05", "asm_name": "ASM386537v1", "asm_submitter": "Yunnan Institute of Microbiology", "gbrs_paired_asm": "GCA_003865375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/865/375/GCF_003865375.1_ASM386537v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2821440", "genome_size_ungapped": "2821271", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003865375.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2663", "protein_coding_gene_count": "2581", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-05", "dateModified": "2018-12-05", "datePublished": "2018-12-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Gulosibacter macacae" ], "sample_taxid": [ "2488791" ], "sample_host_organism": [ "Macaca mulatta" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.782 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2821440", "Number of Sequences": "37", "Longest Sequences (bp)": "337699", "N50 (bp)": "189579", "Gap Ratio (%)": "0.005990", "GCcontent (%)": "64.4", "Number of CDSs": "2613", "Average Protein Length": "327.5", "Coding Ratio (%)": "91.0", "Number of rRNAs": "1", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gulosibacter macacae", "strain": "strain=YIM 102482-1", "accession": "GCA_003865375.1", "taxid": 2488791, "species_taxid": 2488791, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 923, "total_fragments": 924, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gulosibacter faecalis", "strain": "strain=B187", "accession": "GCA_000381765.1", "taxid": 272240, "species_taxid": 272240, "relation_to_type": "type", "validated": true, "ani": 79.2165, "matched_fragments": 337, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter molinativorax", "strain": "strain=ON4", "accession": "GCA_003010915.2", "taxid": 256821, "species_taxid": 256821, "relation_to_type": "type", "validated": true, "ani": 78.8665, "matched_fragments": 309, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter molinativorax", "strain": "strain=DSM 13485", "accession": "GCA_000425685.1", "taxid": 256821, "species_taxid": 256821, "relation_to_type": "type", "validated": true, "ani": 78.8158, "matched_fragments": 297, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter hominis", "strain": "strain=401352-2018", "accession": "GCA_904842695.1", "taxid": 2770504, "species_taxid": 2770504, "relation_to_type": "type", "validated": true, "ani": 78.5445, "matched_fragments": 256, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter chungangensis", "strain": "strain=KCTC 13959", "accession": "GCA_008831155.1", "taxid": 979746, "species_taxid": 979746, "relation_to_type": "type", "validated": true, "ani": 78.1261, "matched_fragments": 241, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbiconiux moechotypicola", "strain": "strain=KCTC 19653", "accession": "GCA_024979255.1", "taxid": 637393, "species_taxid": 637393, "relation_to_type": "type", "validated": true, "ani": 77.5969, "matched_fragments": 177, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium telephonicum", "strain": "strain=S2T63", "accession": "GCA_003651225.1", "taxid": 1714841, "species_taxid": 1714841, "relation_to_type": "type", "validated": true, "ani": 77.5442, "matched_fragments": 152, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 77.4586, "matched_fragments": 183, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium humi", "strain": "strain=DSM 21799", "accession": "GCA_900105715.1", "taxid": 640635, "species_taxid": 640635, "relation_to_type": "type", "validated": true, "ani": 77.4573, "matched_fragments": 141, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces flavus", "strain": "strain=CCM 7623", "accession": "GCA_014635805.1", "taxid": 589382, "species_taxid": 589382, "relation_to_type": "type", "validated": true, "ani": 77.4559, "matched_fragments": 187, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces tardus", "strain": "strain=SJ-23", "accession": "GCA_003710805.1", "taxid": 2583849, "species_taxid": 2583849, "relation_to_type": "type", "validated": true, "ani": 77.429, "matched_fragments": 194, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces aurantiacus", "strain": "strain=DSM 14598", "accession": "GCA_016907355.1", "taxid": 165814, "species_taxid": 165814, "relation_to_type": "type", "validated": true, "ani": 77.4129, "matched_fragments": 179, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium oryzae", "strain": "strain=MB-10", "accession": "GCA_009735645.1", "taxid": 743009, "species_taxid": 743009, 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"matched_fragments": 177, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cavernae", "strain": "strain=SYSU K20354", "accession": "GCA_021044935.1", "taxid": 2898659, "species_taxid": 2898659, "relation_to_type": "type", "validated": true, "ani": 77.3324, "matched_fragments": 193, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sedimenti", "strain": "strain=MIC A30", "accession": "GCA_011750795.2", "taxid": 2694931, "species_taxid": 2694931, "relation_to_type": "type", "validated": true, "ani": 76.9074, "matched_fragments": 77, "total_fragments": 924, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003865375.1", "gtdb_species": "s__Gulosibacter macacae", "ani": 100.0, "matched_fragments": 923, "total_fragments": 924, "gtdb_taxonomy": 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