{
    "type": "genome",
    "identifier": "GCF_003885045.1",
    "organism": "Schaedlerella arabinosiphila",
    "title": "Schaedlerella arabinosiphila",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Temasek Life Sciences Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003885045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10273262",
        "wgs_master": "RHJS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2044587",
        "species_taxid": "2044587",
        "organism_name": "Schaedlerella arabinosiphila",
        "infraspecific_name": "strain=DSM 106076",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/06",
        "asm_name": "ASM388504v1",
        "asm_submitter": "Temasek Life Sciences Laboratory",
        "gbrs_paired_asm": "GCA_003885045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/885/045/GCF_003885045.1_ASM388504v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6521014",
        "genome_size_ungapped": "6521014",
        "gc_percent": "48.000000",
        "replicon_count": "0",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003885045.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "6068",
        "protein_coding_gene_count": "5879",
        "non_coding_gene_count": "66",
        "pubmed_id": "31502946"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-06",
    "dateModified": "2018-12-06",
    "datePublished": "2018-12-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Schaedlerella arabinosiphila"
        ],
        "sample_taxid": [
            "2044587"
        ],
        "sample_host_organism": [
            "Mus musculus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Singapore"
        ],
        "sample_host_location_id": [],
        "data_size": "1.834 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6521014",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "6346997",
        "N50 (bp)": "6346997",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.9",
        "Number of CDSs": "6101",
        "Average Protein Length": "312.5",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "6",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Schaedlerella arabinosiphila",
                "strain": "strain=DSM 106076",
                "accession": "GCA_003885045.1",
                "taxid": 2044587,
                "species_taxid": 2044587,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2172,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acetatifactor muris",
                "strain": "strain=DSM 23669",
                "accession": "GCA_024623325.1",
                "taxid": 879566,
                "species_taxid": 879566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7559,
                "matched_fragments": 142,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia caecimuris",
                "strain": "strain=DSM 29492",
                "accession": "GCA_024622975.1",
                "taxid": 1796615,
                "species_taxid": 1796615,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8783,
                "matched_fragments": 94,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] torques",
                "strain": "strain=ATCC 27756",
                "accession": "GCA_000153925.1",
                "taxid": 33039,
                "species_taxid": 33039,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3682,
                "matched_fragments": 88,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
                "strain": "strain=ATCC 29176",
                "accession": "GCA_000155205.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1835,
                "matched_fragments": 111,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
                "strain": "strain=ATCC 29176",
                "accession": "GCA_025152405.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1168,
                "matched_fragments": 113,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilistercora timonensis",
                "strain": "strain=Marseille-P3756",
                "accession": "GCA_900312975.1",
                "taxid": 2086584,
                "species_taxid": 2086584,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0812,
                "matched_fragments": 167,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luxibacter massiliensis",
                "strain": "strain=Marseille-P5551",
                "accession": "GCA_900604355.1",
                "taxid": 2219695,
                "species_taxid": 2219695,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9878,
                "matched_fragments": 144,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hungatella hathewayi",
                "strain": "strain=DSM 13479",
                "accession": "GCA_025149285.1",
                "taxid": 154046,
                "species_taxid": 154046,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.9683,
                "matched_fragments": 92,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_025152275.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8602,
                "matched_fragments": 166,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] scindens",
                "strain": "strain=ATCC 35704",
                "accession": "GCA_004295125.1",
                "taxid": 29347,
                "species_taxid": 29347,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.8017,
                "matched_fragments": 143,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_025150085.1",
                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7861,
                "matched_fragments": 70,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] scindens",
                "strain": "strain=ATCC 35704",
                "accession": "GCA_000154505.1",
                "taxid": 29347,
                "species_taxid": 29347,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.6842,
                "matched_fragments": 134,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=JCM6515",
                "accession": "GCA_008121495.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.6015,
                "matched_fragments": 171,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_002959615.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.5776,
                "matched_fragments": 168,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mediterraneibacter catenae",
                "strain": "strain=SW178",
                "accession": "GCA_008691045.1",
                "taxid": 2594882,
                "species_taxid": 2594882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5097,
                "matched_fragments": 147,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalicatena faecalis",
                "strain": "strain=AGMB00832",
                "accession": "GCA_012524165.2",
                "taxid": 2726362,
                "species_taxid": 2726362,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.48,
                "matched_fragments": 174,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_000169475.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.329,
                "matched_fragments": 166,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_000154065.1",
                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3098,
                "matched_fragments": 68,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricomes intestini",
                "strain": "strain=DSM 29489",
                "accession": "GCA_004346165.1",
                "taxid": 1796634,
                "species_taxid": 1796634,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0944,
                "matched_fragments": 105,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster asparagiformis",
                "strain": "strain=DSM 15981",
                "accession": "GCA_025149125.1",
                "taxid": 333367,
                "species_taxid": 333367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0593,
                "matched_fragments": 95,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] hylemonae",
                "strain": "strain=DSM 15053",
                "accession": "GCA_000156515.1",
                "taxid": 89153,
                "species_taxid": 89153,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9277,
                "matched_fragments": 109,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Murimonas intestini",
                "strain": "strain=DSM 26524",
                "accession": "GCA_024622195.1",
                "taxid": 1337051,
                "species_taxid": 1337051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5788,
                "matched_fragments": 86,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hespellia stercorisuis",
                "strain": "strain=DSM 15480",
                "accession": "GCA_900142165.1",
                "taxid": 180311,
                "species_taxid": 180311,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4564,
                "matched_fragments": 117,
                "total_fragments": 2172,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 2.08,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003885045.1",
                "gtdb_species": "s__Schaedlerella arabinosiphila",
                "ani": 100.0,
                "matched_fragments": 2172,
                "total_fragments": 2172,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Schaedlerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "96.80",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.68",
                "num_clustered_genomes": 10,
                "status": "conclusive"
            },
            {
                "accession": "GCA_009911175.1",
                "gtdb_species": "s__Schaedlerella sp009911175",
                "ani": 87.0758,
                "matched_fragments": 1207,
                "total_fragments": 2172,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Schaedlerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000403295.2",
                "gtdb_species": "s__Schaedlerella sp000403295",
                "ani": 86.8412,
                "matched_fragments": 1147,
                "total_fragments": 2172,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Schaedlerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.10",
                "min_intra_species_ani": "98.10",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910575475.1",
                "gtdb_species": "s__Schaedlerella sp910575475",
                "ani": 85.4025,
                "matched_fragments": 1143,
                "total_fragments": 2172,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Schaedlerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.35",
                "min_intra_species_ani": "99.35",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009774255.1",
                "gtdb_species": "s__Schaedlerella sp009774255",
                "ani": 81.624,
                "matched_fragments": 851,
                "total_fragments": 2172,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Schaedlerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900751785.1",
                "gtdb_species": "s__Mediterraneibacter faecigallinarum",
                "ani": 77.3077,
                "matched_fragments": 164,
                "total_fragments": 2172,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_910585995.1",
                "gtdb_species": "s__Choladocola sp910585995",
                "ani": 76.6208,
                "matched_fragments": 73,
                "total_fragments": 2172,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Schaedlerella",
        "arabinosiphila"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}