{ "type": "genome", "identifier": "GCF_003931855.1", "organism": "Paenibacillus lentus", "title": "Paenibacillus lentus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korean Collection for Oral Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003931855.1", "bioproject": "PRJNA224116", "biosample": "SAMN10502113", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1338368", "species_taxid": "1338368", "organism_name": "Paenibacillus lentus", "infraspecific_name": "strain=DSM 25539", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/09", "asm_name": "ASM393185v1", "asm_submitter": "Korean Collection for Oral Microbiology", "gbrs_paired_asm": "GCA_003931855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/931/855/GCF_003931855.1_ASM393185v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5288676", "genome_size_ungapped": "5288676", "gc_percent": "46.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003931855.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4743", "protein_coding_gene_count": "4517", "non_coding_gene_count": "103", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-09", "dateModified": "2018-12-09", "datePublished": "2018-12-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus lentus" ], "sample_taxid": [ "1338368" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: South American countries" ], "sample_host_location_id": [], "data_size": "1.503 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5288676", "Number of Sequences": "1", "Longest Sequences (bp)": "5288676", "N50 (bp)": "5288676", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.5", "Number of CDSs": "4741", "Average Protein Length": "317.7", "Coding Ratio (%)": "85.4", "Number of rRNAs": "24", "Number of tRNAs": "73", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus lentus", "strain": "strain=DSM 25539", "accession": "GCA_003931855.1", "taxid": 1338368, "species_taxid": 1338368, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1762, "total_fragments": 1762, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus bouchesdurhonensis", "strain": "strain=Marseille-P3071", "accession": "GCA_900155685.1", "taxid": 1870990, "species_taxid": 1870990, "relation_to_type": "type", "validated": true, "ani": 86.9386, "matched_fragments": 1332, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ihumii", "strain": "strain=AT5", "accession": "GCA_001403875.1", "taxid": 687436, "species_taxid": 687436, "relation_to_type": "type", "validated": true, "ani": 82.0527, "matched_fragments": 1080, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus fonticola", "strain": "strain=DSM 21315", "accession": "GCA_000381905.1", "taxid": 379896, "species_taxid": 379896, "relation_to_type": "type", "validated": true, "ani": 81.7201, "matched_fragments": 957, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus oralis", "strain": "strain=KCOM 3021", "accession": "GCA_003863965.1", "taxid": 2490856, "species_taxid": 2490856, "relation_to_type": "type", "validated": true, "ani": 78.4916, "matched_fragments": 321, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus algicola", "strain": "strain=HB172198", "accession": "GCA_005577435.1", "taxid": 2565926, "species_taxid": 2565926, "relation_to_type": "type", "validated": true, "ani": 78.3274, "matched_fragments": 130, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fontibacillus solani", "strain": "strain=CECT 8693", "accession": "GCA_014138385.1", "taxid": 1572857, "species_taxid": 1572857, "relation_to_type": "type", "validated": true, "ani": 78.1326, "matched_fragments": 272, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus tianjinensis", "strain": "strain=TB2019", "accession": "GCA_017086365.1", "taxid": 2810347, "species_taxid": 2810347, "relation_to_type": "type", "validated": true, "ani": 77.8935, "matched_fragments": 128, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 77.8743, "matched_fragments": 292, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus aceti", "strain": "strain=CGMCC 1.15420", "accession": "GCA_014642755.1", "taxid": 1820010, "species_taxid": 1820010, "relation_to_type": "type", "validated": true, "ani": 77.75, "matched_fragments": 237, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus barengoltzii", "strain": "strain=NBRC 101215", "accession": "GCA_004000745.1", "taxid": 343517, "species_taxid": 343517, "relation_to_type": "type", "validated": true, "ani": 77.6918, "matched_fragments": 253, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus brevis", "strain": "strain=MSJ-6", "accession": "GCA_018919145.1", "taxid": 2841508, "species_taxid": 2841508, "relation_to_type": "type", "validated": true, "ani": 77.4316, "matched_fragments": 221, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus zeisoli", "strain": "strain=3-5-3", "accession": "GCA_003994465.1", "taxid": 2496267, "species_taxid": 2496267, "relation_to_type": "type", "validated": true, "ani": 77.366, "matched_fragments": 154, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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