{
    "type": "genome",
    "identifier": "GCF_003933235.1",
    "organism": "Sphingorhabdus wooponensis",
    "title": "Sphingorhabdus wooponensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Institute of Geoscience and Mineral Resources",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003933235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10135878",
        "wgs_master": "RWJI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "940136",
        "species_taxid": "940136",
        "organism_name": "Sphingorhabdus wooponensis",
        "infraspecific_name": "strain=03SU3-P",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/10",
        "asm_name": "ASM393323v1",
        "asm_submitter": "Korea Institute of Geoscience and Mineral Resources",
        "gbrs_paired_asm": "GCA_003933235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/933/235/GCF_003933235.1_ASM393323v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2177915",
        "genome_size_ungapped": "2177915",
        "gc_percent": "54.500000",
        "replicon_count": "0",
        "scaffold_count": "8",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003933235.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "2093",
        "protein_coding_gene_count": "2034",
        "non_coding_gene_count": "47",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-10",
    "dateModified": "2018-12-10",
    "datePublished": "2018-12-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingorhabdus wooponensis"
        ],
        "sample_taxid": [
            "940136"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.617 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2177915",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "1684678",
        "N50 (bp)": "1684678",
        "Gap Ratio (%)": "0.000092",
        "GCcontent (%)": "54.5",
        "Number of CDSs": "2044",
        "Average Protein Length": "323.2",
        "Coding Ratio (%)": "91.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Sphingorhabdus wooponensis",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 722,
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            },
            {
                "organism_name": "Sphingorhabdus rigui",
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                "taxid": 1282858,
                "species_taxid": 1282858,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Sphingorhabdus profundilacus",
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                "ani_threshold": 95,
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            },
            {
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                "matched_fragments": 309,
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                "status": "below_threshold"
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            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingorhabdus pulchriflava",
                "strain": "strain=GY_G",
                "accession": "GCA_003367235.1",
                "taxid": 2292257,
                "species_taxid": 2292257,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Parasphingorhabdus cellanae",
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                "status": "below_threshold"
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            {
                "organism_name": "Erythrobacter ramosus",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Erythrobacter ramosus",
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                "relation_to_type": "type",
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            {
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            },
            {
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                "ani_threshold": 95,
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            {
                "organism_name": "Croceicoccus gelatinilyticus",
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                "relation_to_type": "type",
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                "organism_name": "Parasphingorhabdus litoris",
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            {
                "organism_name": "Sphingobium ummariense",
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                "organism_name": "Sphingomonas naasensis",
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}