{ "type": "genome", "identifier": "GCF_003934295.1", "organism": "Dickeya lacustris", "title": "Dickeya lacustris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universite Claude Bernard Lyon 1", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003934295.1", "bioproject": "PRJNA224116", "biosample": "SAMN09603982", "wgs_master": "QNUT00000000.1", "refseq_category": "reference genome", "taxid": "2259638", "species_taxid": "2259638", "organism_name": "Dickeya lacustris", "infraspecific_name": "strain=S29", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/11", "asm_name": "ASM393429v1", "asm_submitter": "Universite Claude Bernard Lyon 1", "gbrs_paired_asm": "GCA_003934295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/934/295/GCF_003934295.1_ASM393429v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4306505", "genome_size_ungapped": "4306505", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "118", "contig_count": "118", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003934295.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3940", "protein_coding_gene_count": "3771", "non_coding_gene_count": "85", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-11", "dateModified": "2018-12-11", "datePublished": "2018-12-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Dickeya lacustris" ], "sample_taxid": [ "2259638" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Les Dombes" ], 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"conclusive" }, { "organism_name": "Dickeya aquatica", "strain": "strain=174/2", "accession": "GCA_900095885.1", "taxid": 1401087, "species_taxid": 1401087, "relation_to_type": "type", "validated": true, "ani": 89.0791, "matched_fragments": 1216, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya zeae", "strain": "strain=NCPPB 2538", "accession": "GCA_000406165.1", "taxid": 204042, "species_taxid": 204042, "relation_to_type": "type", "validated": true, "ani": 82.1944, "matched_fragments": 869, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya chrysanthemi", "strain": "strain=NCPPB 402", "accession": "GCA_000406105.1", "taxid": 556, "species_taxid": 556, "relation_to_type": "type", "validated": true, "ani": 82.0946, "matched_fragments": 887, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya dadantii subsp. dieffenbachiae", "strain": "strain=NCPPB 2976", "accession": "GCA_000406185.1", "taxid": 204040, "species_taxid": 204038, "relation_to_type": "type", "validated": true, "ani": 82.0923, "matched_fragments": 894, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya fangzhongdai", "strain": "strain=CGMCC 1.15464", "accession": "GCA_014642955.1", "taxid": 1778540, "species_taxid": 1778540, "relation_to_type": "type", "validated": true, "ani": 81.9537, "matched_fragments": 908, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya fangzhongdai", "strain": "strain=DSM 101947", "accession": "GCA_002812485.1", "taxid": 1778540, "species_taxid": 1778540, "relation_to_type": "type", "validated": true, "ani": 81.8948, "matched_fragments": 916, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya poaceiphila", "strain": "strain=NCPPB 569", "accession": "GCA_007858975.2", "taxid": 568768, "species_taxid": 568768, "relation_to_type": "type", "validated": true, "ani": 81.8392, "matched_fragments": 840, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya solani", "strain": "strain=IPO 2222", "accession": "GCA_001644705.1", "taxid": 1089444, "species_taxid": 1089444, "relation_to_type": "type", "validated": true, "ani": 81.8134, "matched_fragments": 887, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya dadantii", "strain": "strain=NCPPB 898", "accession": "GCA_000406145.1", "taxid": 204038, "species_taxid": 204038, "relation_to_type": "type", "validated": true, "ani": 81.8036, "matched_fragments": 893, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya dianthicola", "strain": "strain=NCPPB 453", "accession": "GCA_000365305.1", "taxid": 204039, "species_taxid": 204039, "relation_to_type": "type", "validated": true, "ani": 81.787, "matched_fragments": 883, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya solani", "strain": "strain=IPO 2222", "accession": "GCA_000400795.1", "taxid": 1089444, "species_taxid": 1089444, "relation_to_type": "type", "validated": true, "ani": 81.7535, "matched_fragments": 884, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya poaceiphila", "strain": "strain=NCPPB 569", "accession": "GCA_000406125.1", "taxid": 568768, "species_taxid": 568768, "relation_to_type": "type", "validated": true, "ani": 81.7468, "matched_fragments": 843, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya undicola", "strain": "strain=2B12", "accession": "GCA_000784735.1", "taxid": 1577887, "species_taxid": 1577887, "relation_to_type": "type", "validated": true, "ani": 81.4456, "matched_fragments": 880, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Musicola keenii", "strain": "strain=A3967", "accession": "GCA_022761095.1", "taxid": 2884250, "species_taxid": 2884250, "relation_to_type": "type", "validated": true, "ani": 79.7148, "matched_fragments": 631, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium carotovorum", "strain": "strain=DSM 30168", "accession": "GCA_900129615.1", "taxid": 554, "species_taxid": 554, "relation_to_type": "type", "validated": true, "ani": 78.9964, "matched_fragments": 475, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium carotovorum subsp. carotovorum", "strain": "strain=ICMP 5702", "accession": "GCA_001039055.1", "taxid": 555, "species_taxid": 554, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9924, "matched_fragments": 471, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium quasiaquaticum", "strain": "strain=A477-S1-J17", "accession": "GCA_014946775.2", "taxid": 2774015, "species_taxid": 2774015, "relation_to_type": "type", "validated": true, "ani": 78.9405, "matched_fragments": 461, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium polaris", "strain": "strain=NIBIO1006", "accession": "GCA_002307355.1", "taxid": 2042057, "species_taxid": 2042057, "relation_to_type": "type", "validated": true, "ani": 78.9125, "matched_fragments": 474, "total_fragments": 1394, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, "species_taxid": 42906, "relation_to_type": "type", "validated": true, "ani": 78.5922, "matched_fragments": 342, "total_fragments": 1394, "ani_threshold": 95, 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