{ "type": "genome", "identifier": "GCF_003937805.1", "organism": "Vibrio pectenicida", "title": "Vibrio pectenicida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CIAD, A.C.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003937805.1", "bioproject": "PRJNA224116", "biosample": "SAMN10524535", "wgs_master": "RSFA00000000.1", "refseq_category": "na", "taxid": "62763", "species_taxid": "62763", "organism_name": "Vibrio pectenicida", "infraspecific_name": "strain=CAIM 594", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/11", "asm_name": "ASM393780v1", "asm_submitter": "CIAD, A.C.", "gbrs_paired_asm": "GCA_003937805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/937/805/GCF_003937805.1_ASM393780v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4441431", "genome_size_ungapped": "4440748", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "277", "contig_count": "277", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003937805.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4113", "protein_coding_gene_count": "3944", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-11", "dateModified": "2018-12-11", "datePublished": "2018-12-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio pectenicida" ], "sample_taxid": [ "62763" ], "sample_host_organism": [ "Pecten maximus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Argenton" ], "sample_host_location_id": [], 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"matched_fragments": 144, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio sagamiensis", "strain": "strain=NBRC 104589", "accession": "GCA_007990935.1", "taxid": 512650, "species_taxid": 512650, "relation_to_type": "type", "validated": true, "ani": 78.9676, "matched_fragments": 196, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio marisflavi", "strain": "strain=CECT 7928", "accession": "GCA_921294215.1", "taxid": 1216040, "species_taxid": 1216040, "relation_to_type": "type", "validated": true, "ani": 78.9583, "matched_fragments": 166, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ichthyoenteri", "strain": "strain=ATCC 700023", "accession": "GCA_000222605.2", "taxid": 142461, "species_taxid": 142461, "relation_to_type": "type", "validated": true, "ani": 78.9415, "matched_fragments": 229, "total_fragments": 1364, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003350295.1", "gtdb_species": "s__Vibrio tetraodonis", "ani": 81.4105, "matched_fragments": 823, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.28", "min_intra_species_ani": "95.28", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009363415.1", "gtdb_species": "s__Vibrio aquimaris", "ani": 81.3525, "matched_fragments": 839, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": 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