{ "type": "genome", "identifier": "GCF_003944715.1", "organism": "Hymenobacter rigui", "title": "Hymenobacter rigui", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003944715.1", "bioproject": "PRJNA224116", "biosample": "SAMN10516804", "wgs_master": "RWIT00000000.1", "refseq_category": "reference genome", "taxid": "334424", "species_taxid": "334424", "organism_name": "Hymenobacter rigui", "infraspecific_name": "strain=KCTC 12533", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/12", "asm_name": "ASM394471v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_003944715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/944/715/GCF_003944715.1_ASM394471v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5284593", "genome_size_ungapped": "5284593", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003944715.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4577", "protein_coding_gene_count": "4502", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-12", "dateModified": "2018-12-12", "datePublished": "2018-12-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter rigui" ], "sample_taxid": [ "334424" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Woopo wetland" ], "sample_host_location_id": [], "data_size": "1.488 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5284593", "Number of Sequences": "41", "Longest Sequences (bp)": "953836", "N50 (bp)": "408184", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.8", "Number of CDSs": "4518", "Average Protein Length": "336.0", "Coding Ratio (%)": "86.2", "Number of rRNAs": "2", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter rigui", "strain": "strain=KCTC 12533", "accession": "GCA_003944715.1", "taxid": 334424, "species_taxid": 334424, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1745, "total_fragments": 1746, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hymenobacter metallilatus", "strain": "strain=9PBR-2", "accession": "GCA_003944705.1", "taxid": 2493666, "species_taxid": 2493666, "relation_to_type": "type", "validated": true, "ani": 85.838, "matched_fragments": 1322, "total_fragments": 1746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter perfusus", "strain": "strain=LMG 26000", "accession": "GCA_003944765.1", "taxid": 1236770, "species_taxid": 1236770, "relation_to_type": "type", "validated": true, "ani": 85.0939, "matched_fragments": 1285, "total_fragments": 1746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter swuensis", "strain": "strain=DY53", "accession": "GCA_000576555.1", "taxid": 1446467, "species_taxid": 1446467, "relation_to_type": "type", "validated": true, "ani": 84.6864, "matched_fragments": 1253, "total_fragments": 1746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 83.503, "matched_fragments": 1081, "total_fragments": 1746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacieicola", "strain": "strain=CGMCC 1.12990", "accession": "GCA_014640315.1", "taxid": 1562124, "species_taxid": 1562124, "relation_to_type": "type", "validated": true, "ani": 82.1623, "matched_fragments": 1053, "total_fragments": 1746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter psychrotolerans", "strain": "strain=DSM 18569", "accession": "GCA_900142395.1", "taxid": 344998, "species_taxid": 344998, "relation_to_type": "type", "validated": true, "ani": 81.9274, "matched_fragments": 929, "total_fragments": 1746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 81.195, "matched_fragments": 930, "total_fragments": 1746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter sediminis", "strain": "strain=ELS1360", "accession": "GCA_003231285.1", "taxid": 2218621, "species_taxid": 2218621, "relation_to_type": "type", "validated": true, "ani": 81.1059, "matched_fragments": 1001, "total_fragments": 1746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter telluris", "strain": "strain=BT186", "accession": "GCA_017313265.1", "taxid": 2816474, "species_taxid": 2816474, "relation_to_type": "type", "validated": true, "ani": 80.5948, "matched_fragments": 910, "total_fragments": 1746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter fodinae", "strain": "strain=92R-1", "accession": "GCA_004745825.1", 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