{ "type": "genome", "identifier": "GCF_003950325.1", "organism": "Vagococcus humatus", "title": "Vagococcus humatus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centers for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003950325.1", "bioproject": "PRJNA224116", "biosample": "SAMN08717810", "wgs_master": "PXZH00000000.1", "refseq_category": "reference genome", "taxid": "1889241", "species_taxid": "1889241", "organism_name": "Vagococcus humatus", "infraspecific_name": "strain=JCM 31581", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/17", "asm_name": "ASM395032v1", "asm_submitter": "Centers for Disease Control and Prevention", "gbrs_paired_asm": "GCA_003950325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/950/325/GCF_003950325.1_ASM395032v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2096134", "genome_size_ungapped": "2096134", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003950325.1-RS_2024_04_17", "annotation_date": "2024-04-17", "total_gene_count": "2057", "protein_coding_gene_count": "1973", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-17", "dateModified": "2018-12-17", "datePublished": "2018-12-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Vagococcus humatus" ], "sample_taxid": [ "1889241" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.586 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2096134", "Number of Sequences": "10", "Longest Sequences (bp)": "1029101", "N50 (bp)": "408065", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.8", "Number of CDSs": "1989", "Average Protein Length": "315.3", "Coding Ratio (%)": "89.8", "Number of rRNAs": "6", "Number of tRNAs": "55", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vagococcus humatus", "strain": "strain=JCM 31581", "accession": "GCA_003950325.1", "taxid": 1889241, "species_taxid": 1889241, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 694, "total_fragments": 695, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vagococcus teuberi", "strain": "strain=DSM 21459", "accession": "GCA_001870205.1", "taxid": 519472, "species_taxid": 519472, "relation_to_type": "type", "validated": true, "ani": 78.2074, "matched_fragments": 96, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus xieshaowenii", "strain": "strain=personal::cf-49", "accession": "GCA_004792515.1", "taxid": 2562451, "species_taxid": 2562451, "relation_to_type": "type", "validated": true, "ani": 78.0893, "matched_fragments": 87, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus coleopterorum", "strain": "strain=HDW17A", "accession": "GCA_011303955.1", "taxid": 2714946, "species_taxid": 2714946, "relation_to_type": "type", "validated": true, "ani": 78.0823, "matched_fragments": 76, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus lutrae", "strain": "strain=CCUG 39187", "accession": "GCA_003987555.1", "taxid": 81947, "species_taxid": 81947, "relation_to_type": "type", "validated": true, "ani": 78.0384, "matched_fragments": 85, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus fluvialis", "strain": "strain=NCDO 2497", "accession": "GCA_003987575.1", "taxid": 2738, "species_taxid": 2738, "relation_to_type": "type", "validated": true, "ani": 77.8341, "matched_fragments": 114, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus carniphilus", "strain": "strain=ATCC BAA-640", "accession": "GCA_014397115.1", "taxid": 218144, "species_taxid": 218144, "relation_to_type": "type", "validated": true, "ani": 77.8169, "matched_fragments": 120, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus dispar", "strain": "strain=ATCC 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