{ "type": "genome", "identifier": "GCF_003951095.1", "organism": "Bifidobacterium goeldii", "title": "Bifidobacterium goeldii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Parma", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003951095.1", "bioproject": "PRJNA224116", "biosample": "SAMN09937950", "wgs_master": "QXGL00000000.1", "refseq_category": "reference genome", "taxid": "2306975", "species_taxid": "2306975", "organism_name": "Bifidobacterium goeldii", "infraspecific_name": "strain=2034B", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/17", "asm_name": "ASM395109v1", "asm_submitter": "University of Parma", "gbrs_paired_asm": "GCA_003951095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/951/095/GCF_003951095.1_ASM395109v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2607372", "genome_size_ungapped": "2607372", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003951095.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "2094", "protein_coding_gene_count": "2017", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-17", "dateModified": "2018-12-17", "datePublished": "2018-12-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium goeldii" ], "sample_taxid": [ "2306975" ], "sample_host_organism": [ "Callimico goeldii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "0.740 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2607372", "Number of Sequences": "24", "Longest Sequences (bp)": "882625", "N50 (bp)": "359971", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.1", "Number of CDSs": "2055", "Average Protein Length": "366.3", "Coding Ratio (%)": "86.6", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium goeldii", "strain": "strain=2034B", "accession": "GCA_003951095.1", "taxid": 2306975, "species_taxid": 2306975, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 856, "total_fragments": 857, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium aerophilum", "strain": "strain=TRE17", "accession": "GCA_010667685.1", "taxid": 1798155, "species_taxid": 1798155, "relation_to_type": "type", "validated": true, "ani": 82.5684, "matched_fragments": 361, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium amazonense", "strain": "strain=MA1", "accession": "GCA_018555435.2", "taxid": 2809027, "species_taxid": 2809027, "relation_to_type": "type", "validated": true, "ani": 81.946, "matched_fragments": 364, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium biavatii", "strain": "strain=DSM 23969", "accession": "GCA_000741165.1", "taxid": 762212, "species_taxid": 762212, "relation_to_type": "type", "validated": true, "ani": 81.9367, "matched_fragments": 395, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium biavatii", "strain": "strain=DSM 23969", "accession": "GCA_000771645.1", "taxid": 762212, "species_taxid": 762212, "relation_to_type": "type", "validated": true, "ani": 81.7931, "matched_fragments": 400, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium callitrichidarum", "strain": "strain=TRI 5", "accession": "GCA_003129905.1", "taxid": 2052941, "species_taxid": 2052941, "relation_to_type": "type", "validated": true, "ani": 81.4117, "matched_fragments": 327, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium santillanense", "strain": "strain=MA2", "accession": "GCA_018555385.1", "taxid": 2809028, "species_taxid": 2809028, "relation_to_type": "type", "validated": true, "ani": 81.407, "matched_fragments": 351, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium colobi", "strain": "strain=LC6", "accession": "GCA_018555455.1", "taxid": 2809026, "species_taxid": 2809026, "relation_to_type": "type", "validated": true, "ani": 81.1568, "matched_fragments": 296, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium saguini", "strain": "strain=DSMZ 23967", "accession": "GCA_017378515.1", "taxid": 762210, "species_taxid": 762210, "relation_to_type": "type", "validated": true, "ani": 81.1165, "matched_fragments": 296, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium saguini", "strain": "strain=DSM 23967", "accession": "GCA_000771625.1", "taxid": 762210, "species_taxid": 762210, "relation_to_type": "type", "validated": true, "ani": 81.0355, "matched_fragments": 295, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium saguini", "strain": "strain=DSM 23967", "accession": "GCA_000741715.1", 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"matched_fragments": 286, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium adolescentis", "strain": "strain=ATCC 15703", "accession": "GCA_000010425.1", "taxid": 1680, "species_taxid": 1680, "relation_to_type": "type", "validated": true, "ani": 79.8689, "matched_fragments": 238, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium adolescentis", "strain": "strain=NCTC11814", "accession": "GCA_900445615.1", "taxid": 1680, "species_taxid": 1680, "relation_to_type": "type", "validated": true, "ani": 79.857, "matched_fragments": 238, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pseudocatenulatum", "strain": "strain=DSM 20438", "accession": "GCA_000173435.1", "taxid": 28026, "species_taxid": 28026, "relation_to_type": "type", "validated": true, "ani": 79.5957, "matched_fragments": 230, "total_fragments": 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