{ "type": "genome", "identifier": "GCF_003952725.1", "organism": "Georhizobium profundi", "title": "Georhizobium profundi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003952725.1", "bioproject": "PRJNA224116", "biosample": "SAMN10095205", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2341112", "species_taxid": "2341112", "organism_name": "Georhizobium profundi", "infraspecific_name": "strain=WS11", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/18", "asm_name": "ASM395272v1", "asm_submitter": "Shanghai Ocean University", "gbrs_paired_asm": "GCA_003952725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/952/725/GCF_003952725.1_ASM395272v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4356607", "genome_size_ungapped": "4356607", "gc_percent": "62.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003952725.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "4250", "protein_coding_gene_count": "4145", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-18", "dateModified": "2018-12-18", "datePublished": "2018-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Georhizobium profundi" ], "sample_taxid": [ "2341112" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: New Britain Trench" ], "sample_host_location_id": [], "data_size": "1.209 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4356607", "Number of Sequences": "1", "Longest Sequences (bp)": "4356607", "N50 (bp)": "4356607", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.3", "Number of CDSs": "4220", "Average Protein Length": "309.9", "Coding Ratio (%)": "90.1", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 78.9156, "matched_fragments": 430, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=DSM 287", "accession": "GCA_009826855.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 78.807, "matched_fragments": 425, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella fusca", "strain": "strain=DSM 21319", "accession": "GCA_014203155.1", "taxid": 544480, "species_taxid": 544480, "relation_to_type": "type", "validated": true, "ani": 78.6218, "matched_fragments": 413, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 78.6197, "matched_fragments": 443, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { 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"GCA_001889605.1", "taxid": 1670800, "species_taxid": 1670800, "relation_to_type": "type", "validated": true, "ani": 77.9705, "matched_fragments": 354, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea halophila", "strain": "strain=KCTC 23107", "accession": "GCA_900220985.1", "taxid": 714899, "species_taxid": 714899, "relation_to_type": "type", "validated": true, "ani": 77.8556, "matched_fragments": 318, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea alexandrii", "strain": "strain=DSM 16655", "accession": "GCA_024105735.1", "taxid": 288436, "species_taxid": 288436, "relation_to_type": "type", "validated": true, "ani": 77.7384, "matched_fragments": 343, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter naphthalenivorans", "strain": "strain=NBRC 107585", "accession": "GCA_007992095.1", "taxid": 1118451, 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