{ "type": "genome", "identifier": "GCF_003953935.1", "organism": "Massilia atriviolacea", "title": "Massilia atriviolacea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Anhui Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003953935.1", "bioproject": "PRJNA224116", "biosample": "SAMN10526606", "wgs_master": "RXLQ00000000.1", "refseq_category": "na", "taxid": "2495579", "species_taxid": "2495579", "organism_name": "Massilia atriviolacea", "infraspecific_name": "strain=SOD", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/18", "asm_name": "ASM395393v1", "asm_submitter": "Anhui Agricultural University", "gbrs_paired_asm": "GCA_003953935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/953/935/GCF_003953935.1_ASM395393v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7355585", "genome_size_ungapped": "7355585", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "81", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003953935.1-RS_2024_08_18", "annotation_date": "2024-08-18", "total_gene_count": "6391", "protein_coding_gene_count": "6234", "non_coding_gene_count": "95", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-18", "dateModified": "2018-12-18", "datePublished": "2018-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Massilia atriviolacea" ], "sample_taxid": [ "2495579" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hefei" ], "sample_host_location_id": [], "data_size": "2.010 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7355585", "Number of Sequences": "81", "Longest Sequences (bp)": "715602", "N50 (bp)": "347160", "Gap Ratio (%)": "0.000639", "GCcontent (%)": "65.4", "Number of CDSs": "6228", "Average Protein Length": "352.1", "Coding Ratio (%)": "89.4", "Number of rRNAs": "2", "Number of tRNAs": "94", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilia atriviolacea", "strain": "strain=SOD", "accession": "GCA_003953935.1", "taxid": 2495579, "species_taxid": 2495579, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2412, "total_fragments": 2414, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Massilia mucilaginosa", "strain": "strain=CCM 8733", "accession": "GCA_011682145.1", "taxid": 2609282, "species_taxid": 2609282, "relation_to_type": "type", "validated": true, "ani": 91.1314, "matched_fragments": 1949, "total_fragments": 2414, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia rubra", "strain": "strain=CCM 8692", "accession": "GCA_011682065.1", "taxid": 2607910, "species_taxid": 2607910, "relation_to_type": "type", "validated": true, "ani": 90.5553, "matched_fragments": 1947, "total_fragments": 2414, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia violaceinigra", "strain": "strain=B2", "accession": "GCA_002752675.1", "taxid": 2045208, "species_taxid": 2045208, "relation_to_type": "type", "validated": true, "ani": 89.3423, "matched_fragments": 1863, "total_fragments": 2414, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia frigida", "strain": "strain=CCM 8695", "accession": "GCA_011682175.1", "taxid": 2609281, "species_taxid": 2609281, "relation_to_type": "type", "validated": true, "ani": 89.2255, "matched_fragments": 1860, "total_fragments": 2414, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia cavernae", "strain": "strain=K1S02-61", "accession": "GCA_003590855.1", "taxid": 2320864, "species_taxid": 2320864, "relation_to_type": "type", "validated": true, "ani": 82.7427, "matched_fragments": 955, "total_fragments": 2414, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia soli", "strain": "strain=R798", "accession": "GCA_016809835.2", "taxid": 2792854, "species_taxid": 2792854, "relation_to_type": "type", "validated": true, "ani": 82.6147, "matched_fragments": 1022, "total_fragments": 2414, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas fusca", "strain": "strain=FT3S", "accession": "GCA_014042365.1", "taxid": 2758568, 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.10", "min_intra_species_ani": "97.10", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.079, "cell_length": 0.297, "doubling_h": null, "growth_tmp": 28.976, "optimum_tmp": 28.026, "optimum_ph": 7.138, "genome_size": 6559913.463, "gc_content": 65.753, "coding_genes": 5602.0, "rRNA16S_genes": 7.0, "tRNA_genes": 84.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.882, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 1.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Massilia", "atriviolacea" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }