{ "type": "genome", "identifier": "GCF_003955715.1", "organism": "Streptomyces aquilus", "title": "Streptomyces aquilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hunan university of science and technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003955715.1", "bioproject": "PRJNA224116", "biosample": "SAMN10531574", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2548456", "species_taxid": "2548456", "organism_name": "Streptomyces aquilus", "infraspecific_name": "strain=GGCR-6", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/19", "asm_name": "ASM395571v1", "asm_submitter": "Hunan university of science and technology", "gbrs_paired_asm": "GCA_003955715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/955/715/GCF_003955715.1_ASM395571v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10393987", "genome_size_ungapped": "10393987", "gc_percent": "71.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003955715.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "9498", "protein_coding_gene_count": "9231", "non_coding_gene_count": "98", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-19", "dateModified": "2018-12-19", "datePublished": "2018-12-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces aquilus" ], "sample_taxid": [ "2548456" ], "sample_host_organism": [ "Xanthium sibiricum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:hunan province,Xiangtan" ], "sample_host_location_id": [], "data_size": "2.789 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10393987", "Number of Sequences": "1", "Longest Sequences (bp)": "10393987", "N50 (bp)": "10393987", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "9586", "Average Protein Length": "324.0", "Coding Ratio (%)": "89.6", "Number of rRNAs": "18", "Number of tRNAs": "87", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces aquilus", "strain": "strain=GGCR-6", "accession": "GCA_003955715.1", "taxid": 2548456, "species_taxid": 2548456, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3450, "total_fragments": 3464, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces antibioticus", "strain": "strain=DSM 40234", "accession": "GCA_001514065.1", "taxid": 1890, "species_taxid": 1890, "relation_to_type": "suspected-type", "validated": true, "ani": 95.2768, "matched_fragments": 2692, "total_fragments": 3464, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Streptomyces justiciae", "strain": "strain=3R004", "accession": "GCA_015163075.1", "taxid": 2780140, "species_taxid": 2780140, "relation_to_type": "type", "validated": true, "ani": 94.6557, "matched_fragments": 2730, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseorubiginosus", "strain": "strain=DSM 40469", "accession": "GCA_001514195.1", "taxid": 67304, "species_taxid": 67304, "relation_to_type": "type", "validated": true, "ani": 86.4551, "matched_fragments": 2255, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cyaneus", "strain": "strain=CGMCC 4.1671", "accession": "GCA_004028635.1", "taxid": 1904, "species_taxid": 1904, "relation_to_type": "type", "validated": true, "ani": 86.36, "matched_fragments": 2200, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces dysideae", "strain": "strain=RV15", "accession": "GCA_001514305.1", "taxid": 909626, "species_taxid": 909626, "relation_to_type": "type", "validated": true, "ani": 86.2655, "matched_fragments": 2103, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces panaciradicis", "strain": "strain=NBRC 109811", "accession": "GCA_023516615.1", "taxid": 1470261, "species_taxid": 1470261, "relation_to_type": "type", "validated": true, "ani": 86.2372, "matched_fragments": 2097, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces davaonensis", "strain": "strain=JCM 4913", "accession": "GCA_000349325.1", "taxid": 348043, "species_taxid": 348043, "relation_to_type": "type", "validated": true, "ani": 86.1678, "matched_fragments": 2130, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces plumbidurans", "strain": "strain=KC 17012", "accession": "GCA_019857225.1", "taxid": 2814589, "species_taxid": 2814589, "relation_to_type": "type", "validated": true, "ani": 85.7784, "matched_fragments": 1944, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 85.7142, "matched_fragments": 1843, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseoruber", "strain": "strain=NRRL B-1818", "accession": "GCA_001418585.1", "taxid": 1943, "species_taxid": 1943, "relation_to_type": "type", "validated": true, "ani": 85.369, "matched_fragments": 1722, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rishiriensis", "strain": "strain=NBRC 13407", "accession": "GCA_003112535.1", "taxid": 68264, "species_taxid": 68264, "relation_to_type": "type", "validated": true, "ani": 85.0678, "matched_fragments": 1971, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces durhamensis", "strain": "strain=NRRL B-3309", "accession": "GCA_000725475.1", "taxid": 68194, "species_taxid": 68194, "relation_to_type": "type", "validated": true, "ani": 84.761, "matched_fragments": 1855, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces shenzhenensis", "strain": "strain=DSM 42034", "accession": "GCA_021462265.1", "taxid": 943815, "species_taxid": 943815, "relation_to_type": "type", "validated": true, "ani": 84.7071, "matched_fragments": 1998, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=NBRC 14893", "accession": "GCA_005405965.1", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 84.5635, "matched_fragments": 1996, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces phaeolivaceus", "strain": "strain=GY16", "accession": "GCA_009184865.1", "taxid": 2653200, "species_taxid": 2653200, "relation_to_type": "type", "validated": true, "ani": 84.2394, "matched_fragments": 1982, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces bottropensis", "strain": "strain=ATCC 25435", "accession": "GCA_000383595.1", "taxid": 42235, "species_taxid": 42235, "relation_to_type": "type", "validated": true, "ani": 84.1892, "matched_fragments": 1881, "total_fragments": 3464, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003955715.1", "gtdb_species": "s__Streptomyces aquilus", "ani": 100.0, "matched_fragments": 3448, "total_fragments": 3464, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.2614, "mean_intra_species_ani": "97.56", "min_intra_species_ani": "95.79", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "inconclusive" }, { "accession": "GCF_001514065.1", "gtdb_species": "s__Streptomyces antibioticus", "ani": 95.2721, "matched_fragments": 2693, "total_fragments": 3464, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.2614, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "inconclusive" }, { "accession": "GCA_002027195.1", "gtdb_species": "s__Streptomyces sp002027195", "ani": 94.9087, "matched_fragments": 2289, "total_fragments": 3464, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0044, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015163075.1", "gtdb_species": "s__Streptomyces sp015163075", "ani": 94.6409, "matched_fragments": 2732, "total_fragments": 3464, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003143935.1", "gtdb_species": "s__Streptomyces sp003143935", "ani": 92.1984, "matched_fragments": 2501, "total_fragments": 3464, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001514195.1", "gtdb_species": "s__Streptomyces griseorubiginosus", "ani": 86.4671, "matched_fragments": 2252, "total_fragments": 3464, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.34", "min_intra_species_ani": "95.64", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.757, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 0.998, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "aquilus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }