{ "type": "genome", "identifier": "GCF_003958625.1", "organism": "Tsuneonella rigui", "title": "Tsuneonella rigui", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003958625.1", "bioproject": "PRJNA224116", "biosample": "SAMN10509849", "wgs_master": "RSEL00000000.1", "refseq_category": "reference genome", "taxid": "1708790", "species_taxid": "1708790", "organism_name": "Tsuneonella rigui", "infraspecific_name": "strain=KCTC 42620", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/21", "asm_name": "ASM395862v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_003958625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/958/625/GCF_003958625.1_ASM395862v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2863004", "genome_size_ungapped": "2863004", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003958625.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "2870", "protein_coding_gene_count": "2800", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-21", "dateModified": "2018-12-21", "datePublished": "2018-12-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Tsuneonella rigui" ], "sample_taxid": [ "1708790" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.787 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2863004", "Number of Sequences": "30", "Longest Sequences (bp)": "485606", "N50 (bp)": "260611", "Gap Ratio (%)": "0.000035", "GCcontent (%)": "66.7", "Number of CDSs": "2800", "Average Protein Length": "312.4", "Coding Ratio (%)": "91.7", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tsuneonella rigui", "strain": "strain=KCTC 42620", "accession": "GCA_003958625.1", "taxid": 1708790, "species_taxid": 1708790, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 937, "total_fragments": 937, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Tsuneonella deserti", "strain": "strain=CGMCC 1.15959", "accession": "GCA_014644315.1", "taxid": 2035528, "species_taxid": 2035528, "relation_to_type": "type", "validated": true, "ani": 82.41, "matched_fragments": 624, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella amylolytica", "strain": "strain=NS1", "accession": "GCA_003626915.1", "taxid": 2338327, "species_taxid": 2338327, "relation_to_type": "type", "validated": true, "ani": 81.7814, "matched_fragments": 592, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella troitsensis", "strain": "strain=JCM 17037", "accession": "GCA_001441535.1", "taxid": 292222, "species_taxid": 292222, "relation_to_type": "type", "validated": true, "ani": 81.3805, "matched_fragments": 548, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella troitsensis", "strain": "strain=KMM 6042", "accession": "GCA_003730315.1", "taxid": 292222, "species_taxid": 292222, "relation_to_type": "type", "validated": true, "ani": 81.2749, "matched_fragments": 552, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella aeria", "strain": "strain=100921-2", "accession": "GCA_009827495.1", "taxid": 1837929, "species_taxid": 1837929, "relation_to_type": "type", "validated": true, "ani": 81.0926, "matched_fragments": 527, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 80.3377, "matched_fragments": 505, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 80.2787, "matched_fragments": 512, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 80.014, "matched_fragments": 498, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 79.7143, "matched_fragments": 471, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania soli", "strain": "strain=6D36", "accession": "GCA_015529805.1", "taxid": 2782568, "species_taxid": 2782568, "relation_to_type": "type", "validated": true, "ani": 79.3663, "matched_fragments": 435, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 79.16, "matched_fragments": 416, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 79.0798, "matched_fragments": 390, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=KCTC 22370", "accession": "GCA_001028625.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 78.9271, "matched_fragments": 398, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=DSM 21428", "accession": "GCA_001461885.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 78.9266, "matched_fragments": 392, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 78.5078, "matched_fragments": 341, "total_fragments": 937, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": 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