{ "type": "genome", "identifier": "GCF_003958635.1", "organism": "Altericroceibacterium xinjiangense", "title": "Altericroceibacterium xinjiangense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003958635.1", "bioproject": "PRJNA224116", "biosample": "SAMN10509850", "wgs_master": "RSEK00000000.1", "refseq_category": "reference genome", "taxid": "762261", "species_taxid": "762261", "organism_name": "Altericroceibacterium xinjiangense", "infraspecific_name": "strain=CCTCC AB 207166", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/21", "asm_name": "ASM395863v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_003958635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/958/635/GCF_003958635.1_ASM395863v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3106580", "genome_size_ungapped": "3106580", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003958635.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "3003", "protein_coding_gene_count": "2887", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-21", "dateModified": "2018-12-21", "datePublished": "2018-12-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Altericroceibacterium xinjiangense" ], "sample_taxid": [ "762261" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.867 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3106580", "Number of Sequences": "59", "Longest Sequences (bp)": "448561", "N50 (bp)": "255758", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.2", "Number of CDSs": "2950", "Average Protein Length": "309.3", "Coding Ratio (%)": "88.1", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 78.9128, "matched_fragments": 332, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 78.7835, "matched_fragments": 296, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium arvoryzae", "strain": "strain=KCTC 32422", "accession": "GCA_014652615.1", "taxid": 1256514, "species_taxid": 1256514, "relation_to_type": "type", "validated": true, "ani": 78.5747, "matched_fragments": 307, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 78.3654, "matched_fragments": 312, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella aeria", "strain": "strain=100921-2", "accession": "GCA_009827495.1", "taxid": 1837929, "species_taxid": 1837929, "relation_to_type": "type", "validated": true, "ani": 78.3151, "matched_fragments": 262, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium colocasiae", "strain": "strain=KCTC 32255", "accession": "GCA_014652555.1", "taxid": 1256513, "species_taxid": 1256513, "relation_to_type": "type", "validated": true, "ani": 78.2595, "matched_fragments": 283, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 78.205, "matched_fragments": 281, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 78.2013, "matched_fragments": 302, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium xixiisoli", "strain": "strain=S36", "accession": "GCA_009827305.1", "taxid": 1476466, "species_taxid": 1476466, "relation_to_type": "type", "validated": true, "ani": 78.1922, "matched_fragments": 325, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus gelatinilyticus", "strain": "strain=1NDH52", "accession": "GCA_018398395.1", "taxid": 2835536, "species_taxid": 2835536, "relation_to_type": "type", "validated": true, "ani": 78.1892, "matched_fragments": 245, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=26DY36", "accession": "GCA_001008165.2", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 78.1541, "matched_fragments": 326, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=DSM 100738", "accession": "GCA_014199315.1", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 78.134, "matched_fragments": 320, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium flavum", "strain": "strain=NBRC 111647", "accession": "GCA_014230315.1", "taxid": 1778672, "species_taxid": 1778672, "relation_to_type": "type", "validated": true, "ani": 78.1264, "matched_fragments": 296, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteraurantiacibacter aestuarii", "strain": "strain=JCM 16339", "accession": "GCA_009827405.1", "taxid": 650004, "species_taxid": 650004, "relation_to_type": "type", "validated": true, "ani": 78.1262, "matched_fragments": 232, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 78.109, "matched_fragments": 271, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter colymbi", "strain": "strain=JCM 18338", "accession": "GCA_002155685.1", "taxid": 1161202, "species_taxid": 1161202, "relation_to_type": "type", "validated": true, "ani": 78.0531, "matched_fragments": 280, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allopontixanthobacter sediminis", "strain": "strain=KCTC 42453", "accession": "GCA_009828115.1", "taxid": 1689985, "species_taxid": 1689985, "relation_to_type": "type", "validated": true, "ani": 77.997, "matched_fragments": 229, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium malaysiense", "strain": "strain=MUSC 273", "accession": "GCA_000802225.1", "taxid": 1348853, "species_taxid": 1348853, "relation_to_type": "type", "validated": true, "ani": 77.9485, "matched_fragments": 257, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=JCM 10282", "accession": "GCA_009828055.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 77.9041, "matched_fragments": 249, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=DSM 8510", "accession": "GCA_014195675.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 77.8674, "matched_fragments": 252, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium ginsenosidimutans", "strain": "strain=FW-6", "accession": "GCA_007954425.1", "taxid": 1176536, "species_taxid": 1176536, "relation_to_type": "type", "validated": true, "ani": 77.8401, "matched_fragments": 238, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella suprasediminis", "strain": "strain=Ery12", "accession": "GCA_003605755.1", "taxid": 2306996, "species_taxid": 2306996, "relation_to_type": "type", "validated": true, "ani": 77.753, "matched_fragments": 204, "total_fragments": 1003, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aestuarii", "strain": "strain=GH1", "accession": "GCA_019711535.1", "taxid": 2867241, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009828065.1", "gtdb_species": "s__Croceibacterium soli", "ani": 79.4934, "matched_fragments": 430, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009827515.1", "gtdb_species": "s__Pelagerythrobacter marinus", "ani": 78.9136, "matched_fragments": 332, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pelagerythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017744315.1", "gtdb_species": "s__Croceibacterium sp017744315", "ani": 78.9115, "matched_fragments": 357, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017308255.1", "gtdb_species": "s__Croceibacterium sp001897135", "ani": 78.9047, "matched_fragments": 378, "total_fragments": 1003, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", 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