{ "type": "genome", "identifier": "GCF_003963515.1", "organism": "Brevibacillus marinus", "title": "Brevibacillus marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "South China Sea Institute of Oceanology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003963515.1", "bioproject": "PRJNA224116", "biosample": "SAMN10587570", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2496837", "species_taxid": "2496837", "organism_name": "Brevibacillus marinus", "infraspecific_name": "strain=SCSIO 07484", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/23", "asm_name": "ASM396351v1", "asm_submitter": "South China Sea Institute of Oceanology", "gbrs_paired_asm": "GCA_003963515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/963/515/GCF_003963515.1_ASM396351v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4079826", "genome_size_ungapped": "4079826", "gc_percent": "56.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003963515.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "3915", "protein_coding_gene_count": "3745", "non_coding_gene_count": "108", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-23", "dateModified": "2018-12-23", "datePublished": "2018-12-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacillus marinus" ], "sample_taxid": [ "2496837" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: South China Sea" ], "sample_host_location_id": [], "data_size": "1.151 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4079826", "Number of Sequences": "2", "Longest Sequences (bp)": "3978392", "N50 (bp)": "3978392", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.2", "Number of CDSs": "3860", "Average Protein Length": "304.7", "Coding Ratio (%)": "86.5", "Number of rRNAs": "21", "Number of tRNAs": "84", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacillus marinus", "strain": "strain=SCSIO 07484", "accession": "GCA_003963515.1", "taxid": 2496837, "species_taxid": 2496837, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1359, "total_fragments": 1359, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Tumebacillus avium", "strain": "strain=AR23208", "accession": "GCA_002162355.1", "taxid": 1903704, "species_taxid": 1903704, "relation_to_type": "type", "validated": true, "ani": 78.441, "matched_fragments": 60, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobacillus composti", "strain": "strain=KWC4", "accession": "GCA_000227705.3", "taxid": 377615, "species_taxid": 377615, "relation_to_type": "type", "validated": true, "ani": 78.3502, "matched_fragments": 81, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus composti", "strain": "strain=FJAT-54423", "accession": "GCA_016406105.1", "taxid": 2796470, "species_taxid": 2796470, "relation_to_type": "type", "validated": true, "ani": 78.1655, "matched_fragments": 208, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus massiliensis", "strain": "strain=phR", "accession": "GCA_000311785.1", "taxid": 1118054, "species_taxid": 1118054, "relation_to_type": "type", "validated": true, "ani": 77.4372, "matched_fragments": 217, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus albicereus", "strain": "strain=UniB2", "accession": "GCA_012676905.1", "taxid": 2726185, "species_taxid": 2726185, "relation_to_type": "type", "validated": true, "ani": 77.3111, "matched_fragments": 71, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus invocatus", "strain": "strain=JCM 12215", "accession": "GCA_003710915.1", "taxid": 173959, "species_taxid": 173959, "relation_to_type": "type", "validated": true, "ani": 76.8327, "matched_fragments": 91, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus fulvus", "strain": "strain=DSM 25523", "accession": "GCA_016908525.1", "taxid": 1125967, "species_taxid": 1125967, "relation_to_type": "type", "validated": true, "ani": 76.7376, "matched_fragments": 101, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus migulae", "strain": "strain=CFH S0501", "accession": "GCA_004521915.1", "taxid": 1644114, "species_taxid": 1644114, "relation_to_type": "type", "validated": true, "ani": 76.6462, "matched_fragments": 116, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus parabrevis", "strain": "strain=NRRL NRS 605", "accession": "GCA_003710905.1", "taxid": 54914, "species_taxid": 54914, "relation_to_type": "type", "validated": true, "ani": 76.6406, "matched_fragments": 124, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobacillus xylanilyticus", "strain": "strain=XE", "accession": "GCA_907165215.1", "taxid": 76633, "species_taxid": 76633, "relation_to_type": "type", "validated": true, "ani": 76.4191, "matched_fragments": 54, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus parabrevis", "strain": "strain=NBRC 12334", "accession": "GCA_006539065.1", "taxid": 54914, "species_taxid": 54914, "relation_to_type": "type", "validated": true, "ani": 76.2313, "matched_fragments": 126, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Calditerricola satsumensis", "strain": "strain=JCM 14719", "accession": "GCA_014646935.1", "taxid": 373054, "species_taxid": 373054, "relation_to_type": "type", "validated": true, "ani": 76.1333, "matched_fragments": 84, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella xylanilytica", "strain": "strain=DSM 25239", "accession": "GCA_014212175.1", "taxid": 557555, "species_taxid": 557555, "relation_to_type": "type", "validated": true, "ani": 75.814, "matched_fragments": 67, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus pasadenensis", "strain": "strain=DSM 19293", "accession": "GCA_000422485.1", "taxid": 217090, "species_taxid": 217090, "relation_to_type": "type", "validated": true, "ani": 75.6806, "matched_fragments": 65, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus pasadenensis", "strain": "strain=NBRC 101214", "accession": "GCA_004001085.1", "taxid": 217090, "species_taxid": 217090, "relation_to_type": "type", "validated": true, "ani": 75.6547, "matched_fragments": 61, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus cymbidii", "strain": "strain=R196", "accession": "GCA_004764705.1", "taxid": 1639034, "species_taxid": 1639034, "relation_to_type": "type", "validated": true, "ani": 75.1764, "matched_fragments": 66, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003963515.1", "gtdb_species": "s__SCSIO-07484 sp003963515", "ani": 100.0, "matched_fragments": 1359, "total_fragments": 1359, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__SCSIO-07484", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_017656235.1", "gtdb_species": "s__SCSIO-07484 sp017656235", "ani": 78.6706, "matched_fragments": 434, "total_fragments": 1359, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__SCSIO-07484", 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018228725.1", "gtdb_species": "s__Brevibacillus sp018228725", "ani": 78.2091, "matched_fragments": 210, "total_fragments": 1359, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002243345.2", "gtdb_species": "s__Paenibacillus_O sp002243345", "ani": 78.139, "matched_fragments": 55, "total_fragments": 1359, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_O", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", 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