{ "type": "genome", "identifier": "GCF_003966145.1", "organism": "Lysinibacillus telephonicus", "title": "Lysinibacillus telephonicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, State of Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003966145.1", "bioproject": "PRJNA224116", "biosample": "SAMN10599890", "wgs_master": "RXNR00000000.1", "refseq_category": "na", "taxid": "1714840", "species_taxid": "1714840", "organism_name": "Lysinibacillus telephonicus", "infraspecific_name": "strain=S5H2222", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/23", "asm_name": "ASM396614v1", "asm_submitter": "Third Institute of Oceanography, State of Oceanic Administration", "gbrs_paired_asm": "GCA_003966145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/966/145/GCF_003966145.1_ASM396614v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4346674", "genome_size_ungapped": "4346674", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "158", "contig_count": "158", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003966145.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4187", "protein_coding_gene_count": "4036", "non_coding_gene_count": "104", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-23", "dateModified": "2018-12-23", "datePublished": "2018-12-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysinibacillus telephonicus" ], "sample_taxid": [ "1714840" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Pune" ], "sample_host_location_id": [], "data_size": "1.232 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4346674", "Number of Sequences": "158", "Longest Sequences (bp)": "127902", "N50 (bp)": "56666", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.8", "Number of CDSs": "4113", "Average Protein Length": "290.8", "Coding Ratio (%)": "82.5", "Number of rRNAs": "6", "Number of tRNAs": "81", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ureibacillus chungkukjangi", "strain": "strain=KACC 16626", "accession": "GCA_003217295.1", "taxid": 1202712, "species_taxid": 1202712, 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95, "status": "below_threshold" }, { "organism_name": "Metabacillus endolithicus", "strain": "strain=KCTC 33579", "accession": "GCA_023078335.1", "taxid": 1535204, "species_taxid": 1535204, "relation_to_type": "type", "validated": true, "ani": 77.165, "matched_fragments": 71, "total_fragments": 1369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 76.8387, "matched_fragments": 86, "total_fragments": 1369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus anthracis", "strain": "strain=Vollum", "accession": "GCA_022221345.1", "taxid": 1392, "species_taxid": 1392, "relation_to_type": "type", "validated": true, "ani": 76.7479, "matched_fragments": 72, "total_fragments": 1369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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