{ "type": "genome", "identifier": "GCF_003966225.1", "organism": "Shewanella canadensis", "title": "Shewanella canadensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, State of Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003966225.1", "bioproject": "PRJNA224116", "biosample": "SAMN10599935", "wgs_master": "RXNU00000000.1", "refseq_category": "reference genome", "taxid": "271096", "species_taxid": "271096", "organism_name": "Shewanella canadensis", "infraspecific_name": "strain=HAW-EB2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/23", "asm_name": "ASM396622v1", "asm_submitter": "Third Institute of Oceanography, State of Oceanic Administration", "gbrs_paired_asm": "GCA_003966225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/966/225/GCF_003966225.1_ASM396622v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5676915", "genome_size_ungapped": "5676915", "gc_percent": "46.000000", "replicon_count": "0", "scaffold_count": "60", "contig_count": "60", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003966225.1-RS_2024_08_07", "annotation_date": "2024-08-07", "total_gene_count": "4939", "protein_coding_gene_count": "4750", "non_coding_gene_count": "145", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-23", "dateModified": "2018-12-23", "datePublished": "2018-12-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella canadensis" ], "sample_taxid": [ "271096" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean" ], "sample_host_location_id": [], "data_size": "1.625 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5676915", "Number of Sequences": "60", "Longest Sequences (bp)": "804344", "N50 (bp)": "420709", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.8", "Number of CDSs": "4807", "Average Protein Length": "325.4", "Coding Ratio (%)": "82.7", "Number of rRNAs": "15", "Number of tRNAs": "111", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella canadensis", "strain": "strain=HAW-EB2", "accession": "GCA_003966225.1", "taxid": 271096, "species_taxid": 271096, 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"below_threshold" }, { "organism_name": "Shewanella schlegeliana", "strain": "strain=LMG 21406", "accession": "GCA_023283605.1", "taxid": 190308, "species_taxid": 190308, "relation_to_type": "type", "validated": true, "ani": 78.9493, "matched_fragments": 402, "total_fragments": 1859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella sairae", "strain": "strain=LMG 21408", "accession": "GCA_023283535.1", "taxid": 190310, "species_taxid": 190310, "relation_to_type": "type", "validated": true, "ani": 78.7614, "matched_fragments": 326, "total_fragments": 1859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella profunda", "strain": "strain=DSM 15900", "accession": "GCA_023283765.1", "taxid": 254793, "species_taxid": 254793, "relation_to_type": "type", "validated": true, "ani": 77.9678, "matched_fragments": 235, "total_fragments": 1859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella 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