{ "type": "genome", "identifier": "GCF_003966715.1", "organism": "Blastochloris tepida", "title": "Blastochloris tepida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Genetics", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003966715.1", "bioproject": "PRJNA224116", "biosample": "SAMD00131669", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2233851", "species_taxid": "2233851", "organism_name": "Blastochloris tepida", "infraspecific_name": "strain=GI", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/29", "asm_name": "ASM396671v1", "asm_submitter": "National Institute of Genetics", "gbrs_paired_asm": "GCA_003966715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/966/715/GCF_003966715.1_ASM396671v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3949390", "genome_size_ungapped": "3949390", "gc_percent": "68.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003966715.1-RS_2024_04_25", "annotation_date": "2024-04-25", "total_gene_count": "3623", "protein_coding_gene_count": "3528", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-29", "dateModified": "2018-08-29", "datePublished": "2018-08-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Blastochloris tepida" ], "sample_taxid": [ "2233851" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:New Mexico, Soda Dam Hot Springs" ], "sample_host_location_id": [], "data_size": "1.064 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 47.0, "max": 47.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3949390", "Number of Sequences": "1", "Longest Sequences (bp)": "3949390", "N50 (bp)": "3949390", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.3", "Number of CDSs": "3606", "Average Protein Length": "311.5", "Coding Ratio (%)": "85.3", "Number of rRNAs": "6", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1315, "total_fragments": 1316, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 92.8048, "matched_fragments": 1075, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris viridis", "strain": "strain=ATCC 19567", "accession": "GCA_001402875.1", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 84.7344, "matched_fragments": 852, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris viridis", "strain": "strain=DSM 133", "accession": "GCA_001548155.2", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 84.6608, "matched_fragments": 863, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes 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