{ "type": "genome", "identifier": "GCF_003966955.1", "organism": "Parolsenella catena", "title": "Parolsenella catena", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Genetics", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003966955.1", "bioproject": "PRJNA224116", "biosample": "SAMD00152193", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2003188", "species_taxid": "2003188", "organism_name": "Parolsenella catena", "infraspecific_name": "strain=JCM 31932", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/01", "asm_name": "ASM396695v1", "asm_submitter": "National Institute of Genetics", "gbrs_paired_asm": "GCA_003966955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/966/955/GCF_003966955.1_ASM396695v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1796691", "genome_size_ungapped": "1796691", "gc_percent": "65.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003966955.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "1625", "protein_coding_gene_count": "1550", "non_coding_gene_count": "68", "pubmed_id": "30762516" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-01", "dateModified": "2018-12-01", "datePublished": "2018-12-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Parolsenella catena" ], "sample_taxid": [ "2003188" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "0.492 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1796691", "Number of Sequences": "1", "Longest Sequences (bp)": "1796691", "N50 (bp)": "1796691", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.6", "Number of CDSs": "1585", "Average Protein Length": "333.7", "Coding Ratio (%)": "88.3", "Number of rRNAs": "12", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parolsenella catena", "strain": "strain=JCM 31932", "accession": "GCA_003966955.1", "taxid": 2003188, "species_taxid": 2003188, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 595, "total_fragments": 598, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Parolsenella massiliensis", "strain": "strain=Marseille-P3237", "accession": "GCA_900143685.1", "taxid": 1871022, "species_taxid": 1871022, "relation_to_type": "type", "validated": true, "ani": 89.3333, "matched_fragments": 511, "total_fragments": 598, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter provencensis", "strain": "strain=Marseille-P2912", "accession": "GCA_900128445.1", "taxid": 1852386, "species_taxid": 1852386, "relation_to_type": "type", "validated": true, "ani": 80.2477, "matched_fragments": 270, "total_fragments": 598, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter mediterraneus", "strain": "strain=Marseille-P3256", "accession": "GCA_900119385.1", "taxid": 1871031, "species_taxid": 1871031, "relation_to_type": "type", "validated": true, "ani": 79.9537, "matched_fragments": 272, "total_fragments": 598, "ani_threshold": 95, "status": 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