{ "type": "genome", "identifier": "GCF_003967355.1", "organism": "Embleya hyalina", "title": "Embleya hyalina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003967355.1", "bioproject": "PRJNA224116", "biosample": "SAMD00153771", "wgs_master": "BIFH00000000.1", "refseq_category": "reference genome", "taxid": "516124", "species_taxid": "516124", "organism_name": "Embleya hyalina", "infraspecific_name": "strain=NBRC 13850", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/08", "asm_name": "ASM396735v1", "asm_submitter": "Biological Resource Center", "gbrs_paired_asm": "GCA_003967355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/967/355/GCF_003967355.1_ASM396735v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "12054215", "genome_size_ungapped": "12030372", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "78", "contig_count": "78", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003967355.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "10341", "protein_coding_gene_count": "10090", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-08", "dateModified": "2018-12-08", "datePublished": "2018-12-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Embleya hyalina" ], "sample_taxid": [ "516124" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Okinawa" ], "sample_host_location_id": [], "data_size": "3.216 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "12054215", "Number of Sequences": "78", "Longest Sequences (bp)": "1012959", "N50 (bp)": "309024", "Gap Ratio (%)": "0.197798", "GCcontent (%)": "71.7", "Number of CDSs": "10573", "Average Protein Length": "325.3", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "89", "Number of CRISPRs": "12" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Embleya hyalina", "strain": "strain=NBRC 13850", "accession": "GCA_003967355.1", "taxid": 516124, "species_taxid": 516124, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3965, "total_fragments": 3983, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Embleya scabrispora", "strain": "strain=DSM 41855", "accession": "GCA_000372745.1", "taxid": 159449, "species_taxid": 159449, "relation_to_type": "type", "validated": true, "ani": 86.9942, "matched_fragments": 2563, "total_fragments": 3983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peterkaempfera bronchialis", "strain": "strain=DSM 106435", "accession": "GCA_003258605.2", "taxid": 2126346, "species_taxid": 2126346, "relation_to_type": "type", "validated": true, "ani": 77.8627, "matched_fragments": 937, "total_fragments": 3983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parmotrematis", "strain": "strain=Ptm05", "accession": "GCA_019890615.1", "taxid": 2873249, "species_taxid": 2873249, "relation_to_type": "type", "validated": true, "ani": 77.8366, "matched_fragments": 976, "total_fragments": 3983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora cheerisanensis", "strain": "strain=KCTC 2395", "accession": "GCA_000696185.1", "taxid": 81942, "species_taxid": 81942, "relation_to_type": "type", "validated": true, "ani": 77.6532, "matched_fragments": 1169, "total_fragments": 3983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila bryophytorum", "strain": "strain=DSM 42138", "accession": "GCA_017164735.1", "taxid": 1436133, "species_taxid": 1436133, "relation_to_type": "type", "validated": true, "ani": 77.6417, "matched_fragments": 871, "total_fragments": 3983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora purpeofusca", "strain": "strain=NRRL B-1817", "accession": "GCA_000718025.1", "taxid": 67352, "species_taxid": 67352, "relation_to_type": "type", "validated": true, "ani": 77.6388, "matched_fragments": 1269, "total_fragments": 3983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus albus", "strain": "strain=NBRC 100918", "accession": "GCA_000787755.1", "taxid": 105425, "species_taxid": 105425, "relation_to_type": "type", "validated": true, "ani": 77.5723, "matched_fragments": 1092, "total_fragments": 3983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces decoyicus", "strain": "strain=NRRL 2666", "accession": "GCA_001270575.1", "taxid": 249567, "species_taxid": 249567, "relation_to_type": "type", "validated": true, "ani": 77.5638, "matched_fragments": 877, "total_fragments": 3983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus albus", "strain": "strain=JL83", "accession": "GCA_000744705.1", "taxid": 105425, "species_taxid": 105425, "relation_to_type": "type", "validated": true, "ani": 77.5502, "matched_fragments": 1118, "total_fragments": 3983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces decoyicus", "strain": "strain=NRRL 2666", "accession": "GCA_019880305.1", 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"strain=DD2A", "accession": "GCA_008041935.1", "taxid": 2593304, "species_taxid": 2593304, "relation_to_type": "type", "validated": true, "ani": 75.8878, "matched_fragments": 547, "total_fragments": 3983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium frankenforstense", "strain": "strain=ST18", "accession": "GCA_001941485.1", "taxid": 1230998, "species_taxid": 1230998, "relation_to_type": "type", "validated": true, "ani": 75.8742, "matched_fragments": 320, "total_fragments": 3983, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003967355.1", "gtdb_species": "s__Embleya hyalina", "ani": 100.0, "matched_fragments": 3962, "total_fragments": 3983, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Embleya", "ani_circumscription_radius": 95.0, 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