{
    "type": "genome",
    "identifier": "GCF_003967555.1",
    "organism": "Dictyobacter kobayashii",
    "title": "Dictyobacter kobayashii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Microbial resources, Graduate School of Agricultual Science, Tohoku University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003967555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00152511",
        "wgs_master": "BIFS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2014872",
        "species_taxid": "2014872",
        "organism_name": "Dictyobacter kobayashii",
        "infraspecific_name": "strain=Uno11",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/14",
        "asm_name": "ASM396755v1",
        "asm_submitter": "Microbial resources, Graduate School of Agricultual Science, Tohoku University",
        "gbrs_paired_asm": "GCA_003967555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/967/555/GCF_003967555.1_ASM396755v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8854844",
        "genome_size_ungapped": "8854844",
        "gc_percent": "50.500000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003967555.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "8080",
        "protein_coding_gene_count": "7639",
        "non_coding_gene_count": "95",
        "pubmed_id": "30990396"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-14",
    "dateModified": "2018-12-14",
    "datePublished": "2018-12-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dictyobacter kobayashii"
        ],
        "sample_taxid": [
            "2014872"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Gunma, Tsumagoi"
        ],
        "sample_host_location_id": [],
        "data_size": "2.521 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 6.94,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8854844",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "6031971",
        "N50 (bp)": "6031971",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.3",
        "Number of CDSs": "8316",
        "Average Protein Length": "286.3",
        "Coding Ratio (%)": "80.7",
        "Number of rRNAs": "27",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Dictyobacter kobayashii",
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                "relation_to_type": "type",
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                "total_fragments": 2950,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Dictyobacter formicarum",
                "strain": "strain=SOSP1-9",
                "accession": "GCA_016587435.1",
                "taxid": 2778368,
                "species_taxid": 2778368,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.408,
                "matched_fragments": 1536,
                "total_fragments": 2950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dictyobacter aurantiacus",
                "strain": "strain=S-27",
                "accession": "GCA_003967515.1",
                "taxid": 1936993,
                "species_taxid": 1936993,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0014,
                "matched_fragments": 1286,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dictyobacter vulcani",
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                "accession": "GCA_008974265.1",
                "taxid": 2607529,
                "species_taxid": 2607529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7756,
                "matched_fragments": 867,
                "total_fragments": 2950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dictyobacter alpinus",
                "strain": "strain=Uno16",
                "accession": "GCA_003967575.1",
                "taxid": 2014873,
                "species_taxid": 2014873,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3863,
                "matched_fragments": 948,
                "total_fragments": 2950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dictyobacter arantiisoli",
                "strain": "strain=Uno17",
                "accession": "GCA_008326305.1",
                "taxid": 2014874,
                "species_taxid": 2014874,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4219,
                "matched_fragments": 499,
                "total_fragments": 2950,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 6.94,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003967555.1",
                "gtdb_species": "s__Dictyobacter kobayashii",
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                "matched_fragments": 2950,
                "total_fragments": 2950,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Dictyobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_016587435.1",
                "gtdb_species": "s__Dictyobacter sp016587435",
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                "matched_fragments": 1539,
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Dictyobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Dictyobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_008974265.1",
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                "matched_fragments": 868,
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Dictyobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_015099395.1",
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            },
            {
                "accession": "GCF_000178855.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_005881495.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__UBA11361",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
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        "genome_size": 8881661.0,
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        "coding_genes": null,
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        "gram_stain": 1.0,
        "sporulation": null,
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        "facultative_respiration": null,
        "anaerobic_respiration": null,
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        "bacillus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Dictyobacter",
        "kobayashii"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}