{
    "type": "genome",
    "identifier": "GCF_003970475.1",
    "organism": "Staphylococcus hyicus",
    "title": "Staphylococcus hyicus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Modernising Medical Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003970475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05978005",
        "wgs_master": "RXWU00000000.1",
        "refseq_category": "na",
        "taxid": "1284",
        "species_taxid": "1284",
        "organism_name": "Staphylococcus hyicus",
        "infraspecific_name": "strain=CCUG 6509",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/24",
        "asm_name": "ASM397047v1",
        "asm_submitter": "Modernising Medical Microbiology",
        "gbrs_paired_asm": "GCA_003970475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/970/475/GCF_003970475.1_ASM397047v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2449200",
        "genome_size_ungapped": "2449017",
        "gc_percent": "35.500000",
        "replicon_count": "0",
        "scaffold_count": "82",
        "contig_count": "82",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003970475.1-RS_2024_08_24",
        "annotation_date": "2024-08-24",
        "total_gene_count": "2421",
        "protein_coding_gene_count": "2292",
        "non_coding_gene_count": "81",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-24",
    "dateModified": "2018-12-24",
    "datePublished": "2018-12-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Staphylococcus hyicus"
        ],
        "sample_taxid": [
            "1284"
        ],
        "sample_host_organism": [
            "pig"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden: Gothenburg"
        ],
        "sample_host_location_id": [],
        "data_size": "0.693 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2449200",
        "Number of Sequences": "82",
        "Longest Sequences (bp)": "283736",
        "N50 (bp)": "67926",
        "Gap Ratio (%)": "0.007472",
        "GCcontent (%)": "35.4",
        "Number of CDSs": "2310",
        "Average Protein Length": "302.0",
        "Coding Ratio (%)": "85.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
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            },
            {
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            },
            {
                "organism_name": "Staphylococcus agnetis",
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                "species_taxid": 985762,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus chromogenes",
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                "accession": "GCA_900458195.1",
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                "species_taxid": 46126,
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                "ani": 81.2163,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus intermedius",
                "strain": "strain=NCTC 11048",
                "accession": "GCA_000308095.1",
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                "species_taxid": 1285,
                "relation_to_type": "type",
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                "ani": 78.7465,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus petrasii",
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                "species_taxid": 1276936,
                "relation_to_type": "type",
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                "ani": 77.8767,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus capitis subsp. capitis",
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                "accession": "GCA_025272975.1",
                "taxid": 72758,
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                "ani": 77.713,
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                "ani_threshold": 95,
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            }
        ],
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                "accession": "GCF_000816085.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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            },
            {
                "accession": "GCF_002901865.1",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
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            },
            {
                "accession": "GCF_900183575.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_900636325.1",
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            {
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            },
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            },
            {
                "accession": "GCF_002901995.1",
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            {
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    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}