{
    "type": "genome",
    "identifier": "GCF_003970555.1",
    "organism": "Staphylococcus piscifermentans",
    "title": "Staphylococcus piscifermentans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Modernising Medical Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003970555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05978009",
        "wgs_master": "RXXA00000000.1",
        "refseq_category": "na",
        "taxid": "70258",
        "species_taxid": "70258",
        "organism_name": "Staphylococcus piscifermentans",
        "infraspecific_name": "strain=DSM 7373",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/24",
        "asm_name": "ASM397055v1",
        "asm_submitter": "Modernising Medical Microbiology",
        "gbrs_paired_asm": "GCA_003970555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/970/555/GCF_003970555.1_ASM397055v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2633558",
        "genome_size_ungapped": "2632877",
        "gc_percent": "36.500000",
        "replicon_count": "0",
        "scaffold_count": "134",
        "contig_count": "134",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003970555.1-RS_2024_08_24",
        "annotation_date": "2024-08-24",
        "total_gene_count": "2538",
        "protein_coding_gene_count": "2409",
        "non_coding_gene_count": "81",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-24",
    "dateModified": "2018-12-24",
    "datePublished": "2018-12-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Staphylococcus piscifermentans"
        ],
        "sample_taxid": [
            "70258"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Braunschweig"
        ],
        "sample_host_location_id": [],
        "data_size": "0.748 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2633558",
        "Number of Sequences": "134",
        "Longest Sequences (bp)": "124852",
        "N50 (bp)": "50484",
        "Gap Ratio (%)": "0.025859",
        "GCcontent (%)": "36.5",
        "Number of CDSs": "2438",
        "Average Protein Length": "301.5",
        "Coding Ratio (%)": "83.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Staphylococcus piscifermentans",
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                "accession": "GCA_003970555.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 812,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus piscifermentans",
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                "validated": true,
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                "matched_fragments": 809,
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                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus debuckii",
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                "accession": "GCA_003718735.1",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus carnosus",
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                "accession": "GCA_900458435.1",
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                "species_taxid": 1281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0824,
                "matched_fragments": 668,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus carnosus",
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                "accession": "GCA_016028275.1",
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                "species_taxid": 1281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0379,
                "matched_fragments": 674,
                "total_fragments": 818,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus simulans",
                "strain": "strain=NCTC 11046",
                "accession": "GCA_002902285.1",
                "taxid": 1286,
                "species_taxid": 1286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8434,
                "matched_fragments": 465,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus simulans",
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                "accession": "GCA_900474685.1",
                "taxid": 1286,
                "species_taxid": 1286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7842,
                "matched_fragments": 475,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Macrococcus armenti",
                "strain": "strain=JEK37",
                "accession": "GCA_020097135.1",
                "taxid": 2875764,
                "species_taxid": 2875764,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 59,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus schleiferi",
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                "accession": "GCA_900458895.2",
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                "species_taxid": 1295,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8716,
                "matched_fragments": 150,
                "total_fragments": 818,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
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        "gtdb_result": [
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                "accession": "GCA_900186985.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
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            },
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                "accession": "GCF_003718735.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900458435.1",
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            },
            {
                "accession": "GCF_001618885.1",
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            {
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            },
            {
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            },
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}