{ "type": "genome", "identifier": "GCF_003970915.1", "organism": "Hymenobacter gummosus", "title": "Hymenobacter gummosus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huazhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003970915.1", "bioproject": "PRJNA224116", "biosample": "SAMN10584193", "wgs_master": "RXOF00000000.1", "refseq_category": "reference genome", "taxid": "1776032", "species_taxid": "1776032", "organism_name": "Hymenobacter gummosus", "infraspecific_name": "strain=KCTC 52166", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/23", "asm_name": "ASM397091v1", "asm_submitter": "Huazhong Agricultural University", "gbrs_paired_asm": "GCA_003970915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/970/915/GCF_003970915.1_ASM397091v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6519694", "genome_size_ungapped": "6519694", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "66", "contig_count": "66", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003970915.1-RS_2024_04_17", "annotation_date": "2024-04-17", "total_gene_count": "5618", "protein_coding_gene_count": "5536", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-23", "dateModified": "2018-12-23", "datePublished": "2018-12-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter gummosus" ], "sample_taxid": [ "1776032" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan: Kaohsiung city" ], "sample_host_location_id": [], "data_size": "1.794 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6519694", "Number of Sequences": "66", "Longest Sequences (bp)": "777143", "N50 (bp)": "278875", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.9", "Number of CDSs": "5578", "Average Protein Length": "334.2", "Coding Ratio (%)": "85.8", "Number of rRNAs": "2", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter gummosus", "strain": "strain=KCTC 52166", "accession": "GCA_003970915.1", "taxid": 1776032, "species_taxid": 1776032, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"below_threshold" }, { "organism_name": "Hymenobacter oligotrophus", "strain": "strain=sh-6", "accession": "GCA_003574965.1", "taxid": 2319843, "species_taxid": 2319843, "relation_to_type": "type", "validated": true, "ani": 81.1954, "matched_fragments": 971, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter aquaticus", "strain": "strain=JCM 31653", "accession": "GCA_004765605.1", "taxid": 1867101, "species_taxid": 1867101, "relation_to_type": "type", "validated": true, "ani": 80.9704, "matched_fragments": 1132, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 80.5016, "matched_fragments": 989, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter 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