{ "type": "genome", "identifier": "GCF_003977595.1", "organism": "Lysinibacillus antri", "title": "Lysinibacillus antri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-Sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003977595.1", "bioproject": "PRJNA224116", "biosample": "SAMN10617868", "wgs_master": "RYYR00000000.1", "refseq_category": "reference genome", "taxid": "2498145", "species_taxid": "2498145", "organism_name": "Lysinibacillus antri", "infraspecific_name": "strain=SYSU K30002", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/27", "asm_name": "ASM397759v1", "asm_submitter": "Sun Yat-Sen University", "gbrs_paired_asm": "GCA_003977595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/977/595/GCF_003977595.1_ASM397759v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4103755", "genome_size_ungapped": "4103755", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "92", "contig_count": "92", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003977595.1-RS_2024_08_07", "annotation_date": "2024-08-07", "total_gene_count": "4053", "protein_coding_gene_count": "3866", "non_coding_gene_count": "137", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-27", "dateModified": "2018-12-27", "datePublished": "2018-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysinibacillus antri" ], "sample_taxid": [ "2498145" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.162 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.04, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4103755", "Number of Sequences": "92", "Longest Sequences (bp)": "318212", "N50 (bp)": "154013", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.2", "Number of CDSs": "3972", "Average Protein Length": "290.9", "Coding Ratio (%)": "84.5", "Number of rRNAs": "11", "Number of tRNAs": "82", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ureibacillus chungkukjangi", "strain": "strain=2RL32", "accession": "GCA_003049615.1", "taxid": 1202712, "species_taxid": 1202712, "relation_to_type": "type", "validated": true, "ani": 79.5215, "matched_fragments": 421, "total_fragments": 1329, "ani_threshold": 95, 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"organism_name": "Lysinibacillus composti", "strain": "strain=DSM 24785", "accession": "GCA_016908465.1", "taxid": 720633, "species_taxid": 720633, "relation_to_type": "type", "validated": true, "ani": 78.9878, "matched_fragments": 403, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ureibacillus manganicus", "strain": "strain=DSM 26584", "accession": "GCA_000772945.1", "taxid": 1266064, "species_taxid": 1266064, "relation_to_type": "type", "validated": true, "ani": 78.8605, "matched_fragments": 349, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ureibacillus manganicus", "strain": "strain=DSM 26584", "accession": "GCA_002200865.1", "taxid": 1266064, "species_taxid": 1266064, "relation_to_type": "type", "validated": true, "ani": 78.8359, "matched_fragments": 351, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ureibacillus massiliensis", 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