{ "type": "genome", "identifier": "GCF_003977605.1", "organism": "Prevotella koreensis", "title": "Prevotella koreensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korean Collection for Oral Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003977605.1", "bioproject": "PRJNA224116", "biosample": "SAMN10461963", "wgs_master": "RYYU00000000.1", "refseq_category": "reference genome", "taxid": "2490854", "species_taxid": "2490854", "organism_name": "Prevotella koreensis", "infraspecific_name": "strain=KCOM 3155", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/27", "asm_name": "ASM397760v1", "asm_submitter": "Korean Collection for Oral Microbiology", "gbrs_paired_asm": "GCA_003977605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/977/605/GCF_003977605.1_ASM397760v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2691540", "genome_size_ungapped": "2691490", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003977605.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2284", "protein_coding_gene_count": "2155", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-27", "dateModified": "2018-12-27", "datePublished": "2018-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella koreensis" ], "sample_taxid": [ "2490854" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "periodontitis" ], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gwangju" ], "sample_host_location_id": [], "data_size": "0.763 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2691540", "Number of Sequences": "2", "Longest Sequences (bp)": "2685380", "N50 (bp)": "2685380", "Gap Ratio (%)": "0.001858", "GCcontent (%)": "43.9", "Number of CDSs": "2194", "Average Protein Length": "350.3", "Coding Ratio (%)": "85.7", "Number of rRNAs": "9", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella koreensis", "strain": "strain=KCOM 3155", "accession": "GCA_003977605.1", "taxid": 2490854, "species_taxid": 2490854, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 896, "total_fragments": 897, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella lascolaii", "strain": "strain=khD1", "accession": "GCA_900079775.1", "taxid": 1776379, "species_taxid": 1776379, "relation_to_type": "type", "validated": true, "ani": 81.9018, "matched_fragments": 87, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_001262015.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 81.7048, "matched_fragments": 88, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella nanceiensis", "strain": "strain=JCM 15639", "accession": "GCA_000613985.1", "taxid": 425941, "species_taxid": 425941, "relation_to_type": "type", "validated": true, "ani": 81.4469, "matched_fragments": 54, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_018128145.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 81.4212, "matched_fragments": 88, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella nanceiensis", "strain": "strain=DSM 19126", "accession": "GCA_000379965.1", "taxid": 425941, "species_taxid": 425941, "relation_to_type": "type", "validated": true, "ani": 81.0786, "matched_fragments": 52, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella ihumii", "strain": "strain=Marseille-P3385", "accession": "GCA_900155655.1", "taxid": 1917878, "species_taxid": 1917878, "relation_to_type": "type", "validated": true, "ani": 81.0568, "matched_fragments": 94, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella amnii", "strain": "strain=DSM 23384", "accession": "GCA_000378745.1", "taxid": 419005, "species_taxid": 419005, "relation_to_type": "type", "validated": true, "ani": 80.9599, "matched_fragments": 64, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella amnii", "strain": "strain=JCM 14753", "accession": "GCA_000613765.1", "taxid": 419005, "species_taxid": 419005, "relation_to_type": "type", "validated": true, "ani": 80.7696, "matched_fragments": 60, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=JCM 17724", "accession": "GCA_000614245.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 80.5339, "matched_fragments": 76, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter muris", "strain": "strain=PMUR", "accession": "GCA_013166605.1", "taxid": 2736290, "species_taxid": 2736290, "relation_to_type": "type", "validated": true, "ani": 80.2613, "matched_fragments": 75, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella brunnea", "strain": "strain=A2672", "accession": "GCA_008016795.1", "taxid": 2508867, "species_taxid": 2508867, "relation_to_type": "type", "validated": true, "ani": 79.8263, "matched_fragments": 63, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oris", "strain": "strain=NCTC13071", "accession": "GCA_900637655.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 79.6557, "matched_fragments": 83, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 79.385, "matched_fragments": 92, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella baroniae", "strain": "strain=JCM 13447", "accession": "GCA_000613565.1", "taxid": 305719, "species_taxid": 305719, "relation_to_type": "type", "validated": true, "ani": 79.3347, "matched_fragments": 84, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oris", "strain": "strain=JCM 12252", "accession": "GCA_000613505.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 78.9146, "matched_fragments": 81, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oris", "strain": "strain=DSM 18711", "accession": "GCA_000377685.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 78.9129, "matched_fragments": 79, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3608, "matched_fragments": 79, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella pectinovora", "strain": "strain=P4-76", "accession": "GCA_000834015.1", "taxid": 1602169, "species_taxid": 1602169, "relation_to_type": "type", "validated": true, "ani": 77.2639, "matched_fragments": 78, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella brevis", "strain": "strain=ATCC 19188", "accession": "GCA_000621725.1", "taxid": 83231, "species_taxid": 83231, "relation_to_type": "type", "validated": true, "ani": 76.6872, "matched_fragments": 65, "total_fragments": 897, "ani_threshold": 95, "status": "below_threshold" } ], 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Prevotella", "koreensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }