{ "type": "genome", "identifier": "GCF_003977665.1", "organism": "Dyella choica", "title": "Dyella choica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003977665.1", "bioproject": "PRJNA224116", "biosample": "SAMN10601536", "wgs_master": "RYYV00000000.1", "refseq_category": "reference genome", "taxid": "1927959", "species_taxid": "1927959", "organism_name": "Dyella choica", "infraspecific_name": "strain=4 M-K27", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/27", "asm_name": "ASM397766v1", "asm_submitter": "Sun Yat-sen University", "gbrs_paired_asm": "GCA_003977665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/977/665/GCF_003977665.1_ASM397766v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5488740", "genome_size_ungapped": "5488496", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "68", "contig_count": "68", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003977665.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "4733", "protein_coding_gene_count": "4648", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-27", "dateModified": "2018-12-27", "datePublished": "2018-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Dyella choica" ], "sample_taxid": [ "1927959" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Guangdong Province, Dinghushan Biosphere 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"num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.414, "cell_length": 0.291, "doubling_h": null, "growth_tmp": 28.444, "optimum_tmp": 29.444, "optimum_ph": 6.927, "genome_size": 4785947.716, "gc_content": 65.733, "coding_genes": 4123.333, "rRNA16S_genes": 2.0, "tRNA_genes": 50.666, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.888, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Dyella", "choica" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }