{
    "type": "genome",
    "identifier": "GCF_003987015.1",
    "organism": "Aliidiomarina taiwanensis",
    "title": "Aliidiomarina taiwanensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003987015.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08101769",
        "wgs_master": "PIPQ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "946228",
        "species_taxid": "946228",
        "organism_name": "Aliidiomarina taiwanensis",
        "infraspecific_name": "strain=AIT1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/31",
        "asm_name": "ASM398701v1",
        "asm_submitter": "The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources",
        "gbrs_paired_asm": "GCA_003987015.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/987/015/GCF_003987015.1_ASM398701v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2529473",
        "genome_size_ungapped": "2529473",
        "gc_percent": "48.500000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003987015.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2381",
        "protein_coding_gene_count": "2303",
        "non_coding_gene_count": "54",
        "pubmed_id": "30364313"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-31",
    "dateModified": "2018-12-31",
    "datePublished": "2018-12-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aliidiomarina taiwanensis"
        ],
        "sample_taxid": [
            "946228"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: New Taipei"
        ],
        "sample_host_location_id": [],
        "data_size": "0.723 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2529473",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "928937",
        "N50 (bp)": "483587",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.7",
        "Number of CDSs": "2338",
        "Average Protein Length": "331.9",
        "Coding Ratio (%)": "92.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
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                "organism_name": "Aliidiomarina taiwanensis",
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                "relation_to_type": "type",
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            {
                "organism_name": "Aliidiomarina celeris",
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                "species_taxid": 2249428,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Aliidiomarina shirensis",
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            {
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                "species_taxid": 859059,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliidiomarina halalkaliphila",
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                "species_taxid": 2593535,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliidiomarina indica",
                "strain": "strain=SW123",
                "accession": "GCA_015354615.1",
                "taxid": 2749147,
                "species_taxid": 2749147,
                "relation_to_type": "type",
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                "ani": 77.5816,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudidiomarina woesei",
                "strain": "strain=DSM 27808",
                "accession": "GCA_001418345.1",
                "taxid": 1381080,
                "species_taxid": 1381080,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudidiomarina woesei",
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                "accession": "GCA_001517265.1",
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                "species_taxid": 1381080,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
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            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_003987015.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003987345.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina",
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                "mean_intra_species_ani": "99.30",
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            },
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                "accession": "GCF_003290085.1",
                "gtdb_species": "s__Aliidiomarina sp003290085",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}