{ "type": "genome", "identifier": "GCF_003987265.1", "organism": "Pseudidiomarina sediminum", "title": "Pseudidiomarina sediminum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003987265.1", "bioproject": "PRJNA224116", "biosample": "SAMN08102322", "wgs_master": "PIQE00000000.1", "refseq_category": "na", "taxid": "431675", "species_taxid": "431675", "organism_name": "Pseudidiomarina sediminum", "infraspecific_name": "strain=c121", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/31", "asm_name": "ASM398726v1", "asm_submitter": "The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources", "gbrs_paired_asm": "GCA_003987265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/987/265/GCF_003987265.1_ASM398726v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2622760", "genome_size_ungapped": "2622760", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003987265.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2466", "protein_coding_gene_count": "2391", "non_coding_gene_count": "59", "pubmed_id": "30364313" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-31", "dateModified": "2018-12-31", "datePublished": "2018-12-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudidiomarina sediminum" ], "sample_taxid": [ "431675" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Fujian" ], "sample_host_location_id": [], "data_size": "0.748 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2622760", "Number of Sequences": "7", "Longest Sequences (bp)": "1473225", "N50 (bp)": "1473225", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.4", "Number of CDSs": "2411", "Average Protein Length": "339.3", "Coding Ratio (%)": "93.6", "Number of rRNAs": "4", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudidiomarina sediminum", "strain": "strain=c121", "accession": "GCA_003987265.1", "taxid": 431675, "species_taxid": 431675, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina donghaiensis", "strain": "strain=908033", "accession": "GCA_003987405.1", "taxid": 519452, "species_taxid": 519452, "relation_to_type": "type", "validated": true, "ani": 78.8007, "matched_fragments": 199, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina donghaiensis", "strain": "strain=CGMCC 1.7284", "accession": "GCA_900116895.1", "taxid": 519452, "species_taxid": 519452, "relation_to_type": "type", "validated": true, "ani": 78.776, "matched_fragments": 200, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina maritima", "strain": "strain=CGMCC 1.7285", "accession": "GCA_900115255.1", "taxid": 519453, "species_taxid": 519453, "relation_to_type": "type", "validated": true, "ani": 78.6999, "matched_fragments": 186, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina tainanensis", "strain": "strain=PIN1", "accession": "GCA_004214835.1", "taxid": 502365, "species_taxid": 502365, "relation_to_type": "type", "validated": true, "ani": 78.6257, "matched_fragments": 200, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina planktonica", "strain": "strain=CGMCC 1.12458", "accession": "GCA_900177775.1", "taxid": 1323738, "species_taxid": 1323738, "relation_to_type": "type", "validated": true, "ani": 78.0564, "matched_fragments": 131, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina halalkaliphila", "strain": "strain=IM 1326", "accession": "GCA_007096385.1", "taxid": 2593535, "species_taxid": 2593535, "relation_to_type": "type", "validated": true, "ani": 77.2194, "matched_fragments": 68, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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