{ "type": "genome", "identifier": "GCF_003987335.1", "organism": "Aliidiomarina maris", "title": "Aliidiomarina maris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003987335.1", "bioproject": "PRJNA224116", "biosample": "SAMN08099979", "wgs_master": "PIPK00000000.1", "refseq_category": "reference genome", "taxid": "531312", "species_taxid": "531312", "organism_name": "Aliidiomarina maris", "infraspecific_name": "strain=CF12-14", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/31", "asm_name": "ASM398733v1", "asm_submitter": "The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources", "gbrs_paired_asm": "GCA_003987335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/987/335/GCF_003987335.1_ASM398733v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3016204", "genome_size_ungapped": "3016204", "gc_percent": "50.000000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003987335.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2872", "protein_coding_gene_count": "2765", "non_coding_gene_count": "69", "pubmed_id": "30364313" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-31", "dateModified": "2018-12-31", "datePublished": "2018-12-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Aliidiomarina maris" ], "sample_taxid": [ "531312" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: South China Sea" ], "sample_host_location_id": [], "data_size": "0.861 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3016204", "Number of Sequences": "44", "Longest Sequences (bp)": "524293", "N50 (bp)": "221091", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.1", "Number of CDSs": "2808", "Average Protein Length": "323.7", "Coding Ratio (%)": "90.4", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aliidiomarina maris", "strain": "strain=CF12-14", "accession": "GCA_003987335.1", "taxid": 531312, "species_taxid": 531312, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 980, "total_fragments": 982, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aliidiomarina soli", "strain": "strain=Y4G10-17", "accession": "GCA_003986975.1", "taxid": 1928574, "species_taxid": 1928574, "relation_to_type": "type", "validated": true, "ani": 78.9751, "matched_fragments": 212, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina sedimenti", "strain": "strain=GBSy1", "accession": "GCA_003986955.1", "taxid": 1933879, "species_taxid": 1933879, "relation_to_type": "type", "validated": true, "ani": 78.8443, "matched_fragments": 221, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina celeris", "strain": "strain=F3105", "accession": "GCA_003316875.1", "taxid": 2249428, "species_taxid": 2249428, "relation_to_type": "type", "validated": true, "ani": 78.4741, "matched_fragments": 103, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina minuta", "strain": "strain=MLST1", "accession": "GCA_003987145.1", "taxid": 880057, "species_taxid": 880057, "relation_to_type": "type", "validated": true, "ani": 78.2392, "matched_fragments": 146, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina iranensis", "strain": "strain=GBPy7", "accession": "GCA_003987135.1", "taxid": 1434071, "species_taxid": 1434071, "relation_to_type": "type", "validated": true, "ani": 77.9433, "matched_fragments": 77, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina shirensis", "strain": "strain=AIS", "accession": "GCA_003987345.1", "taxid": 1048642, "species_taxid": 1048642, "relation_to_type": "type", "validated": true, "ani": 77.9361, "matched_fragments": 74, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina halalkaliphila", "strain": "strain=IM 1326", "accession": "GCA_007096385.1", "taxid": 2593535, "species_taxid": 2593535, "relation_to_type": "type", "validated": true, "ani": 77.8884, "matched_fragments": 86, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina indica", "strain": "strain=SW123", "accession": "GCA_015354615.1", "taxid": 2749147, "species_taxid": 2749147, "relation_to_type": "type", "validated": true, "ani": 77.5983, "matched_fragments": 91, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina xiamenensis", "strain": "strain=10-D-4", "accession": "GCA_000299895.1", "taxid": 1207041, "species_taxid": 1207041, "relation_to_type": "type", "validated": true, "ani": 77.408, "matched_fragments": 68, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina loihiensis", "strain": "strain=L2TR", "accession": "GCA_000008465.1", "taxid": 135577, "species_taxid": 135577, "relation_to_type": "type", "validated": true, "ani": 77.3169, "matched_fragments": 67, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina ramblicola", "strain": "strain=R22", "accession": "GCA_003987255.1", "taxid": 263724, "species_taxid": 263724, "relation_to_type": "type", "validated": true, "ani": 77.2318, "matched_fragments": 51, "total_fragments": 982, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003987335.1", "gtdb_species": "s__Aliidiomarina maris", "ani": 100.0, "matched_fragments": 980, "total_fragments": 982, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina", "ani_circumscription_radius": 95.0, 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003999375.1", "gtdb_species": "s__Pseudidiomarina mangrovi", "ani": 78.5463, "matched_fragments": 71, "total_fragments": 982, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003316875.1", "gtdb_species": "s__Aliidiomarina celeris", "ani": 78.4704, "matched_fragments": 102, "total_fragments": 982, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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