{ "type": "genome", "identifier": "GCF_003987475.1", "organism": "Idiomarina tyrosinivorans", "title": "Idiomarina tyrosinivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003987475.1", "bioproject": "PRJNA224116", "biosample": "SAMN08102328", "wgs_master": "PIQH00000000.1", "refseq_category": "reference genome", "taxid": "1445662", "species_taxid": "1445662", "organism_name": "Idiomarina tyrosinivorans", "infraspecific_name": "strain=CC-PW-9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/31", "asm_name": "ASM398747v1", "asm_submitter": "The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources", "gbrs_paired_asm": "GCA_003987475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/987/475/GCF_003987475.1_ASM398747v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2426240", "genome_size_ungapped": "2426240", "gc_percent": "49.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003987475.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2348", "protein_coding_gene_count": "2279", "non_coding_gene_count": "61", "pubmed_id": "30364313" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-31", "dateModified": "2018-12-31", "datePublished": "2018-12-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Idiomarina tyrosinivorans" ], "sample_taxid": [ "1445662" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Pingtung" ], "sample_host_location_id": [], "data_size": "0.694 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2426240", "Number of Sequences": "21", "Longest Sequences (bp)": "403592", "N50 (bp)": "271163", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.3", "Number of CDSs": "2290", "Average Protein Length": "325.9", "Coding Ratio (%)": "92.3", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Idiomarina tyrosinivorans", "strain": "strain=CC-PW-9", "accession": "GCA_003987475.1", "taxid": 1445662, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina aquimaris", "strain": "strain=SW15", "accession": "GCA_003987395.1", "taxid": 641841, "species_taxid": 641841, "relation_to_type": "type", "validated": true, "ani": 78.7837, "matched_fragments": 97, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina fontislapidosi", "strain": "strain=F23", "accession": "GCA_003987025.1", "taxid": 263723, "species_taxid": 263723, "relation_to_type": "type", "validated": true, "ani": 78.337, "matched_fragments": 115, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina fontislapidosi", "strain": "strain=CECT 5859", "accession": "GCA_003226255.1", "taxid": 263723, "species_taxid": 263723, "relation_to_type": "type", "validated": true, "ani": 78.2331, "matched_fragments": 114, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina marina", "strain": "strain=PIM1", "accession": "GCA_003987045.1", "taxid": 502366, "species_taxid": 502366, "relation_to_type": "type", "validated": true, "ani": 78.1647, "matched_fragments": 84, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina planktonica", "strain": "strain=TS-T11", "accession": "GCA_003987425.1", "taxid": 1323738, "species_taxid": 1323738, "relation_to_type": "type", "validated": true, "ani": 77.8844, "matched_fragments": 88, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina planktonica", "strain": "strain=CGMCC 1.12458", "accession": "GCA_900177775.1", "taxid": 1323738, "species_taxid": 1323738, "relation_to_type": "type", "validated": true, "ani": 77.8325, "matched_fragments": 88, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina halalkaliphila", 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