{ "type": "genome", "identifier": "GCF_003987555.1", "organism": "Vagococcus lutrae", "title": "Vagococcus lutrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centers for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003987555.1", "bioproject": "PRJNA224116", "biosample": "SAMN06609016", "wgs_master": "NGJW00000000.1", "refseq_category": "na", "taxid": "81947", "species_taxid": "81947", "organism_name": "Vagococcus lutrae", "infraspecific_name": "strain=CCUG 39187", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/17", "asm_name": "ASM398755v1", "asm_submitter": "Centers for Disease Control and Prevention", "gbrs_paired_asm": "GCA_003987555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/987/555/GCF_003987555.1_ASM398755v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1992244", "genome_size_ungapped": "1992244", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003987555.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "1916", "protein_coding_gene_count": "1841", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-17", "dateModified": "2018-12-17", "datePublished": "2018-12-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Vagococcus lutrae" ], "sample_taxid": [ "81947" ], "sample_host_organism": [ "Lutra lutra" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Isle of Mull" ], "sample_host_location_id": [], "data_size": "0.565 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1992244", "Number of Sequences": "22", "Longest Sequences (bp)": "344184", "N50 (bp)": "141567", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.6", "Number of CDSs": "1848", "Average Protein Length": "327.0", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vagococcus lutrae", "strain": "strain=CCUG 39187", "accession": "GCA_003987555.1", "taxid": 81947, "species_taxid": 81947, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 648, "total_fragments": 652, 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