{ "type": "genome", "identifier": "GCF_003987565.1", "organism": "Vagococcus fessus", "title": "Vagococcus fessus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centers for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003987565.1", "bioproject": "PRJNA224116", "biosample": "SAMN06609014", "wgs_master": "NGJY00000000.1", "refseq_category": "reference genome", "taxid": "120370", "species_taxid": "120370", "organism_name": "Vagococcus fessus", "infraspecific_name": "strain=CCUG 41755", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/17", "asm_name": "ASM398756v1", "asm_submitter": "Centers for Disease Control and Prevention", "gbrs_paired_asm": "GCA_003987565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/987/565/GCF_003987565.1_ASM398756v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2257832", "genome_size_ungapped": "2257832", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003987565.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "2199", "protein_coding_gene_count": "2123", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-17", "dateModified": "2018-12-17", "datePublished": "2018-12-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Vagococcus fessus" ], "sample_taxid": [ "120370" ], "sample_host_organism": [ "Phoca vitulina" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.633 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2257832", "Number of Sequences": "8", "Longest Sequences (bp)": "899127", "N50 (bp)": "823406", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.4", "Number of CDSs": "2153", "Average Protein Length": "313.9", "Coding Ratio (%)": "89.8", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vagococcus fessus", "strain": "strain=CCUG 41755", "accession": "GCA_003987565.1", "taxid": 120370, "species_taxid": 120370, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 748, 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"below_threshold" }, { "organism_name": "Vagococcus allomyrinae", "strain": "strain=BWB3-3", "accession": "GCA_017829975.1", "taxid": 2794353, "species_taxid": 2794353, "relation_to_type": "type", "validated": true, "ani": 78.7436, "matched_fragments": 104, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus fluvialis", "strain": "strain=DSM 5731", "accession": "GCA_003337315.1", "taxid": 2738, "species_taxid": 2738, "relation_to_type": "type", "validated": true, "ani": 78.413, "matched_fragments": 97, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus rivorum", "strain": "strain=LMG 25899", "accession": "GCA_001742285.1", "taxid": 762845, "species_taxid": 762845, "relation_to_type": "type", "validated": true, "ani": 78.3741, "matched_fragments": 70, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus salmoninarum", "strain": "strain=NCFB 2777", "accession": "GCA_003987495.1", "taxid": 2739, "species_taxid": 2739, "relation_to_type": "type", "validated": true, "ani": 78.3, "matched_fragments": 155, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus quebecensis", "strain": "strain=LMG 26306", "accession": "GCA_001730365.1", "taxid": 903983, "species_taxid": 903983, "relation_to_type": "type", "validated": true, "ani": 78.2814, "matched_fragments": 71, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus aquimarinus", "strain": "strain=DSM 17690", "accession": "GCA_001885765.1", "taxid": 328396, "species_taxid": 328396, "relation_to_type": "type", "validated": true, "ani": 78.2478, "matched_fragments": 53, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus carniphilus", "strain": "strain=ATCC BAA-640", "accession": "GCA_014397115.1", "taxid": 218144, "species_taxid": 218144, "relation_to_type": "type", "validated": true, "ani": 78.1279, "matched_fragments": 116, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus alcedinis", "strain": "strain=CCM 8433", "accession": "GCA_014635985.1", "taxid": 1274384, "species_taxid": 1274384, "relation_to_type": "type", "validated": true, "ani": 78.0101, "matched_fragments": 58, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus silagei", "strain": "strain=2B-2", "accession": "GCA_004795745.1", "taxid": 2508885, "species_taxid": 2508885, "relation_to_type": "type", "validated": true, "ani": 77.9433, "matched_fragments": 88, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus quebecensis", "strain": "strain=DSM 23327", "accession": "GCA_001886145.1", "taxid": 903983, "species_taxid": 903983, 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77.5617, "matched_fragments": 81, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus thailandicus", "strain": "strain=DSM 21767", "accession": "GCA_001886265.1", "taxid": 417368, "species_taxid": 417368, "relation_to_type": "type", "validated": true, "ani": 77.551, "matched_fragments": 79, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Carnobacterium gallinarum", "strain": "strain=MT44", "accession": "GCA_000744375.1", "taxid": 2749, "species_taxid": 2749, "relation_to_type": "type", "validated": true, "ani": 77.4775, "matched_fragments": 87, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus villorum", "strain": "strain=NBRC 100699", "accession": "GCA_007990225.1", "taxid": 112904, "species_taxid": 112904, "relation_to_type": "type", "validated": true, "ani": 77.1536, "matched_fragments": 69, "total_fragments": 748, 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