{ "type": "genome", "identifier": "GCF_003989745.1", "organism": "Legionella septentrionalis", "title": "Legionella septentrionalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "kingMed Center for Clinical Laborary", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003989745.1", "bioproject": "PRJNA224116", "biosample": "SAMN10610692", "wgs_master": "RZGS00000000.1", "refseq_category": "reference genome", "taxid": "2498109", "species_taxid": "2498109", "organism_name": "Legionella septentrionalis", "infraspecific_name": "strain=km711", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/01", "asm_name": "ASM398974v1", "asm_submitter": "kingMed Center for Clinical Laborary", "gbrs_paired_asm": "GCA_003989745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/989/745/GCF_003989745.1_ASM398974v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2660547", "genome_size_ungapped": "2660547", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "85", "contig_count": "85", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003989745.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2485", "protein_coding_gene_count": "2372", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-01", "dateModified": "2019-01-01", "datePublished": "2019-01-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella septentrionalis" ], "sample_taxid": [ "2498109" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Beijing" ], "sample_host_location_id": [], "data_size": "0.758 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2660547", "Number of Sequences": "85", "Longest Sequences (bp)": "235000", "N50 (bp)": "59014", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.2", "Number of CDSs": "2392", "Average Protein Length": "323.9", "Coding Ratio (%)": "87.4", "Number of rRNAs": "1", "Number of tRNAs": "39", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella septentrionalis", "strain": "strain=km711", "accession": "GCA_003989745.1", "taxid": 2498109, "species_taxid": 2498109, 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"below_threshold" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=JA-26-G1-E2", "accession": "GCA_900640205.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 78.0918, "matched_fragments": 76, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=DSM 19215", "accession": "GCA_900114725.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 78.0497, "matched_fragments": 80, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=JA-26-G1-E2", "accession": "GCA_001467745.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 77.9969, "matched_fragments": 79, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella yabuuchiae", "strain": "strain=OA1-2", "accession": "GCA_900640115.1", "taxid": 376727, "species_taxid": 376727, "relation_to_type": "type", "validated": true, "ani": 77.7655, "matched_fragments": 67, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella oakridgensis", "strain": "strain=Oak Ridge-10", "accession": "GCA_001467925.1", "taxid": 29423, "species_taxid": 29423, "relation_to_type": "type", "validated": true, "ani": 77.2606, "matched_fragments": 112, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella oakridgensis", "strain": "strain=ATCC 33761 = DSM 21215; OR-10", "accession": "GCA_000512355.1", "taxid": 29423, "species_taxid": 29423, "relation_to_type": "type", "validated": true, "ani": 77.2529, "matched_fragments": 113, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella oakridgensis", "strain": "strain=ATCC 33761", "accession": "GCA_001648605.1", "taxid": 29423, "species_taxid": 29423, "relation_to_type": "type", "validated": true, "ani": 77.2071, "matched_fragments": 112, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella feeleii", "strain": "strain=NCTC12022", "accession": "GCA_900452475.1", "taxid": 453, "species_taxid": 453, "relation_to_type": "type", "validated": true, "ani": 77.1305, "matched_fragments": 64, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella cherrii", "strain": "strain=NCTC11976", "accession": "GCA_900635815.1", "taxid": 28084, "species_taxid": 28084, "relation_to_type": "type", "validated": true, "ani": 77.0714, "matched_fragments": 58, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella cherrii", "strain": "strain=ORW", "accession": "GCA_001467035.1", "taxid": 28084, "species_taxid": 28084, "relation_to_type": "type", "validated": true, "ani": 77.0489, "matched_fragments": 64, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella lansingensis", "strain": "strain=ATCC 49751", "accession": "GCA_001467795.1", "taxid": 45067, "species_taxid": 45067, "relation_to_type": "type", "validated": true, "ani": 76.9945, "matched_fragments": 54, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella cherrii", "strain": "strain=ORW", "accession": "GCA_900640085.1", "taxid": 28084, "species_taxid": 28084, "relation_to_type": "type", "validated": true, "ani": 76.8712, "matched_fragments": 58, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella cherrii", "strain": "strain=DSM 19213", "accession": "GCA_000621385.1", "taxid": 28084, "species_taxid": 28084, "relation_to_type": "type", "validated": true, "ani": 76.865, 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