{ "type": "genome", "identifier": "GCF_003991425.1", "organism": "Paenibacillus lutimineralis", "title": "Paenibacillus lutimineralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Food Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003991425.1", "bioproject": "PRJNA224116", "biosample": "SAMN10524882", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2707005", "species_taxid": "2707005", "organism_name": "Paenibacillus lutimineralis", "infraspecific_name": "strain=MBLB1234", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/03", "asm_name": "ASM399142v1", "asm_submitter": "Korea Food Research Institute", "gbrs_paired_asm": "GCA_003991425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/991/425/GCF_003991425.1_ASM399142v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6497679", "genome_size_ungapped": "6497679", "gc_percent": "46.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-06", "total_gene_count": "5852", "protein_coding_gene_count": "5625", "non_coding_gene_count": "138", "pubmed_id": "31177311" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-03", "dateModified": "2019-01-03", "datePublished": "2019-01-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus lutimineralis" ], "sample_taxid": [ "2707005" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Pohang" ], "sample_host_location_id": [], "data_size": "1.854 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6497679", "Number of Sequences": "1", "Longest Sequences (bp)": "6497679", "N50 (bp)": "6497679", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.4", "Number of CDSs": "5786", "Average Protein Length": "319.1", "Coding Ratio (%)": "85.2", "Number of rRNAs": "30", "Number of tRNAs": "105", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus lutimineralis", "strain": "strain=MBLB1234", "accession": "GCA_003991425.1", "taxid": 2707005, "species_taxid": 2707005, "relation_to_type": "type", "validated": true, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fontibacillus solani", "strain": "strain=CECT 8693", "accession": "GCA_014138385.1", "taxid": 1572857, "species_taxid": 1572857, "relation_to_type": "type", "validated": true, "ani": 78.5271, "matched_fragments": 300, "total_fragments": 2165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus oralis", "strain": "strain=KCOM 3021", "accession": "GCA_003863965.1", "taxid": 2490856, "species_taxid": 2490856, "relation_to_type": "type", "validated": true, "ani": 78.3678, "matched_fragments": 320, "total_fragments": 2165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus tianjinensis", "strain": "strain=TB2019", "accession": "GCA_017086365.1", "taxid": 2810347, "species_taxid": 2810347, "relation_to_type": "type", "validated": true, "ani": 78.367, "matched_fragments": 145, "total_fragments": 2165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus physcomitrellae", "strain": "strain=XB", "accession": "GCA_002240225.1", "taxid": 1619311, "species_taxid": 1619311, "relation_to_type": "type", "validated": true, "ani": 78.0125, "matched_fragments": 156, "total_fragments": 2165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus antibioticophila", "strain": "strain=GD11", "accession": "GCA_000455265.1", "taxid": 1274374, "species_taxid": 1274374, "relation_to_type": "type", "validated": true, "ani": 77.9713, "matched_fragments": 270, "total_fragments": 2165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus caui", "strain": "strain=81-11", "accession": "GCA_019904135.1", "taxid": 2873927, "species_taxid": 2873927, "relation_to_type": "type", "validated": true, "ani": 77.8592, "matched_fragments": 152, "total_fragments": 2165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus sanguinis", "strain": "strain=DSM 16941", "accession": "GCA_000374825.1", "taxid": 225906, "species_taxid": 225906, "relation_to_type": "type", "validated": true, "ani": 77.5496, "matched_fragments": 230, "total_fragments": 2165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus massiliensis", "strain": "strain=DSM 16942", "accession": "GCA_000377505.1", "taxid": 225917, "species_taxid": 225917, "relation_to_type": "type", "validated": true, "ani": 77.3949, "matched_fragments": 109, "total_fragments": 2165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus gallinarum", "strain": "strain=Sa2BVA9", "accession": "GCA_014836635.1", "taxid": 2762232, "species_taxid": 2762232, "relation_to_type": "type", "validated": true, "ani": 77.2406, "matched_fragments": 97, "total_fragments": 2165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus physcomitrellae", "strain": "strain=CGMCC 1.15044", "accession": 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