{ "type": "genome", "identifier": "GCF_003991875.1", "organism": "Microbacterium lemovicicum", "title": "Microbacterium lemovicicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CEA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003991875.1", "bioproject": "PRJNA224116", "biosample": "SAMN09748166", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1072463", "species_taxid": "1072463", "organism_name": "Microbacterium lemovicicum", "infraspecific_name": "strain=Viu22", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/04", "asm_name": "ASM399187v1", "asm_submitter": "CEA", "gbrs_paired_asm": "GCA_003991875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/991/875/GCF_003991875.1_ASM399187v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3555647", "genome_size_ungapped": "3555647", "gc_percent": "71.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003991875.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "3354", "protein_coding_gene_count": "3284", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-04", "dateModified": "2019-01-04", "datePublished": "2019-01-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbacterium lemovicicum" ], "sample_taxid": [ "1072463" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.943 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3555647", "Number of Sequences": "1", "Longest Sequences (bp)": "3555647", "N50 (bp)": "3555647", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "3338", "Average Protein Length": "327.1", "Coding Ratio (%)": "92.1", "Number of rRNAs": "6", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microbacterium lemovicicum", "strain": "strain=Viu22", "accession": "GCA_003991875.1", "taxid": 1072463, "species_taxid": 1072463, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1182, "total_fragments": 1185, "ani_threshold": 95, "status": "conclusive" }, { 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"accession": "GCA_006539445.1", "taxid": 33885, "species_taxid": 33885, "relation_to_type": "type", "validated": true, "ani": 81.1152, "matched_fragments": 523, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hibisci", "strain": "strain=CCTCC AB 2016180", "accession": "GCA_015278255.1", "taxid": 2036000, "species_taxid": 2036000, "relation_to_type": "type", "validated": true, "ani": 81.0686, "matched_fragments": 625, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium saccharophilum", "strain": "strain=NBRC 108778", "accession": "GCA_007992455.1", "taxid": 1213358, "species_taxid": 1213358, "relation_to_type": "type", "validated": true, "ani": 81.0251, "matched_fragments": 556, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium trichothecenolyticum", "strain": "strain=DSM 8608", "accession": "GCA_000956465.1", "taxid": 69370, "species_taxid": 69370, "relation_to_type": "type", "validated": true, "ani": 81.0053, "matched_fragments": 673, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium yannicii", "strain": "strain=DSM 23203", "accession": "GCA_024055635.1", "taxid": 671622, "species_taxid": 671622, "relation_to_type": "type", "validated": true, "ani": 80.9979, "matched_fragments": 648, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium cremeum", "strain": "strain=NY27", "accession": "GCA_015277855.1", "taxid": 2782169, "species_taxid": 2782169, "relation_to_type": "type", "validated": true, "ani": 80.9971, "matched_fragments": 638, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium saccharophilum", "strain": "strain=K-1", "accession": "GCA_008017435.1", "taxid": 1213358, "species_taxid": 1213358, "relation_to_type": "type", "validated": true, "ani": 80.8991, "matched_fragments": 561, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium immunditiarum", "strain": "strain=DSM 24662", "accession": "GCA_013409785.1", "taxid": 337480, "species_taxid": 337480, "relation_to_type": "type", "validated": true, "ani": 80.8244, "matched_fragments": 616, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hatanonis", "strain": "strain=JCM14558", "accession": "GCA_008017415.1", "taxid": 404366, "species_taxid": 404366, "relation_to_type": "type", "validated": true, "ani": 80.8109, "matched_fragments": 608, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium ulmi", "strain": "strain=JCM 14282", "accession": "GCA_013004565.1", "taxid": 179095, "species_taxid": 179095, "relation_to_type": "type", "validated": true, "ani": 80.7657, "matched_fragments": 579, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium pullorum", "strain": "strain=Sa4CUA7", "accession": "GCA_014836535.1", "taxid": 2762236, "species_taxid": 2762236, "relation_to_type": "type", "validated": true, "ani": 80.7424, "matched_fragments": 543, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium ulmi", "strain": "strain=CECT 5976", "accession": "GCA_011759705.1", "taxid": 179095, "species_taxid": 179095, "relation_to_type": "type", "validated": true, "ani": 80.7071, "matched_fragments": 597, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium rhizomatis", "strain": "strain=JCM 30598", "accession": "GCA_008710745.1", "taxid": 1631477, "species_taxid": 1631477, "relation_to_type": "type", "validated": true, "ani": 80.6174, "matched_fragments": 638, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium testaceum", "strain": "strain=NBRC 12675", "accession": "GCA_006539145.1", "taxid": 2033, "species_taxid": 2033, "relation_to_type": "suspected-type", "validated": true, "ani": 80.5905, "matched_fragments": 584, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003991875.1", "gtdb_species": "s__Microbacterium lemovicicum", "ani": 100.0, "matched_fragments": 1181, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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