{ "type": "genome", "identifier": "GCF_003992725.1", "organism": "Rhodomicrobium lacus", "title": "Rhodomicrobium lacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JNTUH", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003992725.1", "bioproject": "PRJNA224116", "biosample": "SAMN10619086", "wgs_master": "RZNF00000000.1", "refseq_category": "reference genome", "taxid": "2498452", "species_taxid": "2498452", "organism_name": "Rhodomicrobium lacus", "infraspecific_name": "strain=JA980", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/04", "asm_name": "ASM399272v1", "asm_submitter": "JNTUH", "gbrs_paired_asm": "GCA_003992725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/992/725/GCF_003992725.1_ASM399272v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3886079", "genome_size_ungapped": "3886079", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003992725.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "3554", "protein_coding_gene_count": "3463", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-04", "dateModified": "2019-01-04", "datePublished": "2019-01-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodomicrobium lacus" ], "sample_taxid": [ "2498452" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Guwhati" ], "sample_host_location_id": [], "data_size": 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121719, "species_taxid": 121719, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6753, "matched_fragments": 118, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter dioxanivorans", "strain": "strain=YN2", "accession": "GCA_016807805.1", "taxid": 2528964, "species_taxid": 2528964, "relation_to_type": "type", "validated": true, "ani": 76.6514, "matched_fragments": 164, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter aminoxidans", "strain": "strain=ATCC BAA-299", "accession": "GCA_023571765.1", "taxid": 186280, "species_taxid": 186280, "relation_to_type": "type", "validated": true, "ani": 76.6238, "matched_fragments": 167, "total_fragments": 1287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, 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