{ "type": "genome", "identifier": "GCF_003993775.1", "organism": "Frigidibacter oleivorans", "title": "Frigidibacter oleivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003993775.1", "bioproject": "PRJNA224116", "biosample": "SAMN10373676", "wgs_master": "RJRZ00000000.1", "refseq_category": "reference genome", "taxid": "2487129", "species_taxid": "2487129", "organism_name": "Frigidibacter oleivorans", "infraspecific_name": "strain=XJ4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/04", "asm_name": "ASM399377v1", "asm_submitter": "China Agricultural University", "gbrs_paired_asm": "GCA_003993775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/993/775/GCF_003993775.1_ASM399377v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4051972", "genome_size_ungapped": "4051972", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003993775.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4039", "protein_coding_gene_count": "3951", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-04", "dateModified": "2019-01-04", "datePublished": "2019-01-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Frigidibacter oleivorans" ], "sample_taxid": [ "2487129" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Xinjiang" ], "sample_host_location_id": [], "data_size": "1.090 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4051972", "Number of Sequences": "38", "Longest Sequences (bp)": "597227", "N50 (bp)": "165987", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.5", "Number of CDSs": "3962", "Average Protein Length": "308.7", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Frigidibacter albus", "strain": "strain=SP32", "accession": "GCA_009908165.1", "taxid": 1465486, "species_taxid": 1465486, "relation_to_type": "type", "validated": true, "ani": 82.3834, "matched_fragments": 784, 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"below_threshold" }, { "organism_name": "Frigidibacter mobilis", "strain": "strain=cai42", "accession": "GCA_001620265.1", "taxid": 1335048, "species_taxid": 1335048, "relation_to_type": "type", "validated": true, "ani": 82.0885, "matched_fragments": 808, "total_fragments": 1333, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus binzhouensis", "strain": "strain=wg1", "accession": "GCA_016446475.1", "taxid": 2796149, "species_taxid": 2796149, "relation_to_type": "type", "validated": true, "ani": 80.2211, "matched_fragments": 594, "total_fragments": 1333, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 80.1884, "matched_fragments": 584, "total_fragments": 1333, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter 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null, "spiral_cell_shape": null }, "_genome_taxon": [ "Frigidibacter", "oleivorans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }