{ "type": "genome", "identifier": "GCF_003994255.1", "organism": "Brachybacterium paraconglomeratum", "title": "Brachybacterium paraconglomeratum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xinjiang Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003994255.1", "bioproject": "PRJNA224116", "biosample": "SAMN09625555", "wgs_master": "QOCI00000000.1", "refseq_category": "reference genome", "taxid": "173362", "species_taxid": "173362", "organism_name": "Brachybacterium paraconglomeratum", "infraspecific_name": "strain=KCTC 9916", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/10", "asm_name": "ASM399425v1", "asm_submitter": "Xinjiang Normal University", "gbrs_paired_asm": "GCA_003994255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/994/255/GCF_003994255.1_ASM399425v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3783832", "genome_size_ungapped": "3783792", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003994255.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3407", "protein_coding_gene_count": "3308", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-10", "dateModified": "2018-12-10", "datePublished": "2018-12-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Brachybacterium paraconglomeratum" ], "sample_taxid": [ "173362" ], "sample_host_organism": [ "mssing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.000 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3783832", "Number of Sequences": "30", "Longest Sequences (bp)": "906390", "N50 (bp)": "333371", "Gap Ratio (%)": "0.001057", "GCcontent (%)": "72.2", "Number of CDSs": "3394", "Average Protein Length": "334.5", "Coding Ratio (%)": "90.0", "Number of rRNAs": "5", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brachybacterium aquaticum", "strain": "strain=DSM 28796", "accession": "GCA_014204755.1", "taxid": 1432564, "species_taxid": 1432564, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium halotolerans subsp. kimchii", "strain": "strain=CBA3105", "accession": "GCA_020792675.1", "taxid": 2887346, "species_taxid": 2795215, "relation_to_type": "type", "validated": true, "ani": 81.4944, "matched_fragments": 677, "total_fragments": 1245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium kimchii", "strain": "strain=CBA3104", "accession": "GCA_023373525.1", "taxid": 2942909, "species_taxid": 2942909, "relation_to_type": "type", "validated": true, "ani": 81.1998, "matched_fragments": 689, "total_fragments": 1245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanitalea stevensii", "strain": "strain=Sa1BUA1", "accession": "GCA_014837105.1", "taxid": 2763072, "species_taxid": 2763072, "relation_to_type": "type", "validated": true, "ani": 77.4044, "matched_fragments": 364, "total_fragments": 1245, "ani_threshold": 95, "status": 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"coccus_cell_shape": 0.5, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.166, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Brachybacterium", "paraconglomeratum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }